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The map label for this gene is fliR [H]

Identifier: 84624129

GI number: 84624129

Start: 2744289

End: 2745062

Strand: Direct

Name: fliR [H]

Synonym: XOO_2472

Alternate gene names: 84624129

Gene position: 2744289-2745062 (Clockwise)

Preceding gene: 84624128

Following gene: 84624130

Centisome position: 55.55

GC content: 66.02

Gene sequence:

>774_bases
ATGGTGATCGACGGCCAGCGCGCGTTCGCGATGGTCGGGGCGATCATGTGGACCATGCTGCGTACCGGTGCGTTGCTCAC
CGCTATGCCGTTGATCGGCACGCGCGCCGTGCCCGGACGGGTGCGGGTGATGCTGGCCGGGACGCTGGCAATGGTGCTGG
CGCCGATCCTGCCGCCGGTGCCGGAGTGGGACGGTTTTACCGCACAGGCGGTGCTGAGCATCGCGCGCGAGCTGGCGATC
GGGGCCAGCATGGGCTTCATGCTGAAGCTGATTTTCGAAGCCGGCGCATTGGCCGGCGAGCTGGTGTCGCAGTCCACCGG
CCTGTCGTTCGCACAGATGTCCGACCCCATGCGCGGCGTGACGTCGGGCGTGATCGCGCAGTGGTTCTACATCGGCTTCG
GGCTGCTGTTCTTCGCGGCTAACGGCCATCTGGCGGTGATCGCACTGCTGGTGGATAGCTATAAAGCCTTGCCGATCGGC
ACCGCATTGCCCGATGCCGGCGCATTCGCCGAAGTAGCGCCCACCCTGTTTCTGCAGATCCTGCGCGGCGGGCTGACCCT
GGCGTTGCCGATGATGGTGGCGATGCTGGCGGTCAACCTGGCCTTCGGCGCGCTGTCCAAGGCCGCGCCGGCGTTGAATC
CGGTGCAGTTGGGCTTGCCGCTGACGGTGTTGCTGGGGCTGTTCCTGTTGTCGAGCTTCGCCAGCGAATTCGCCCCCCCT
GTGCAGCGCATGTTCGATACCGCATTCGACGCCGCCAGAAAATTGACCGCGTAG

Upstream 100 bases:

>100_bases
CATGCTGCTAGGGCATCTGGTGGAGTTCACCATCGCGCTGTTCCAGCGCATACCGCATCTGATCGGCTAGCGGGTAGCGC
GGATGGATGCTGCAACCCAG

Downstream 100 bases:

>100_bases
TCCGCCGTTCAAGTTTGTAATCGACAGGCCGTCAATCCCACTGACTTATTGATGCTCACACCTCATCAACCACCTACCCA
TCCAACGGCGACCGATGTTC

Product: flagellar biosynthetic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MVIDGQRAFAMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLSIARELAI
GASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYIGFGLLFFAANGHLAVIALLVDSYKALPIG
TALPDAGAFAEVAPTLFLQILRGGLTLALPMMVAMLAVNLAFGALSKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPP
VQRMFDTAFDAARKLTA

Sequences:

>Translated_257_residues
MVIDGQRAFAMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLSIARELAI
GASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYIGFGLLFFAANGHLAVIALLVDSYKALPIG
TALPDAGAFAEVAPTLFLQILRGGLTLALPMMVAMLAVNLAFGALSKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPP
VQRMFDTAFDAARKLTA
>Mature_257_residues
MVIDGQRAFAMVGAIMWTMLRTGALLTAMPLIGTRAVPGRVRVMLAGTLAMVLAPILPPVPEWDGFTAQAVLSIARELAI
GASMGFMLKLIFEAGALAGELVSQSTGLSFAQMSDPMRGVTSGVIAQWFYIGFGLLFFAANGHLAVIALLVDSYKALPIG
TALPDAGAFAEVAPTLFLQILRGGLTLALPMMVAMLAVNLAFGALSKAAPALNPVQLGLPLTVLLGLFLLSSFASEFAPP
VQRMFDTAFDAARKLTA

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=250, Percent_Identity=33.6, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 26854; Mature: 26854

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9324257; 11677609 [H]