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The map label for this gene is yfbE [C]

Identifier: 84624105

GI number: 84624105

Start: 2720967

End: 2722076

Strand: Direct

Name: yfbE [C]

Synonym: XOO_2448

Alternate gene names: 84624105

Gene position: 2720967-2722076 (Clockwise)

Preceding gene: 84624104

Following gene: 84624106

Centisome position: 55.08

GC content: 62.07

Gene sequence:

>1110_bases
ATGCCCATCCCCGTCACCAGTCCGCTGCTGCCGCCACTGGAAGAATTTCTGCCCTACCTGGAGCGGATCTGGACCAGCCG
CATCGTCAGCAACGGTGGCGAGATGCACCGCGCACTCGAGCGCGCGCTCTGCGATTACCTGGGCGTGCCGCATCTGGCAT
TGCTGACCAACGGCACCACCGCGCTGATCACCGCACTGCAGGCGCTGCGCATCACCGGCGAGGTGATCACCACGCCCTAC
TCCTTCGTTGCCACCGCGCATTCGCTGCTGTGGAAAAGCATCACCCCGGTGTTTGTGGACATCGATCCGTTGACGCTCAA
CATGGACCCGTCGAAGATCGAAGCGGCCATCACCCCGCAGACCACTGCAATCATGCCGGTGCATTGCTACGGCACCGCGT
GCGATACGACGGCCATCACGCGCATCGCCGACATCTACAACCTCAAGGTGATCTACGACGCTGCGCATGCCTTCGGCGTG
CGCGATGACGGCGGCTCGCTCCTGCGCCATGGCGACCTGAGCGTGTTGAGCTTTCATGCGACCAAGGTCTTCAACACCTT
CGAAGGCGGCGCAATTGTCTGCCCCGACCAAAAAACCTATCAGCGCATCGGGCATCTGAAAAACTTCGGCTTCGTCGATG
AAACCACGGTGGTAGCGCCGGGCATCAACGGCAAAATGAACGAGATCAGCGCGGCGTTCGGCTTGCTGCAACTGCAGCAC
ATCGACAATGCCATCGCACAGCGCAGTGCCATCGATGCGCAGTACCGGCAGCGGTTGAGCGATGTGCGCGGCATCCGCTG
TGTTGCGCGGCCCGCGCATTCCAGCGCCAATTACGCGTATTTTCCGGTGTTGGTGCAGGACCACTATCCGTTGTCGCGCG
ATGCGCTGTACCACTTGATGCGCGAGCACGGCATTCTGGTGCGGCGCTATTTCTATCCGTTGATCAGCGACTTCCCGATG
TACCGTGCCCTGCCCTCGTCGGCGCCGGCGTGGTTGCCGGTGGCGCGATCGGTGGCCGCACAGGTGCTGTGCCTGCCGAT
CTTTCCTGGCTTGAGCAGCGACCAGGTCGATACCGTTGCCGATCTCATCGCCGGCCAACAGGCGACATGA

Upstream 100 bases:

>100_bases
TGCGCTCGCTGGCATAGCGCTTGCTTCAGCAGGATCACGCCCTTTGCAGCCGACGGCTGCGGCGAAATCCCGACCTTCAC
CAGCACCTGCCGAGGCATTG

Downstream 100 bases:

>100_bases
CCGCAACACGCTTCACGTGCATTTCAGACTTACATCTCTTCAACAGGCAACCAGGCGAGACCGCATGACCCAGGAAACGT
TTATCGAGAACTTCATTTCC

Product: nucleotide sugar transaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MPIPVTSPLLPPLEEFLPYLERIWTSRIVSNGGEMHRALERALCDYLGVPHLALLTNGTTALITALQALRITGEVITTPY
SFVATAHSLLWKSITPVFVDIDPLTLNMDPSKIEAAITPQTTAIMPVHCYGTACDTTAITRIADIYNLKVIYDAAHAFGV
RDDGGSLLRHGDLSVLSFHATKVFNTFEGGAIVCPDQKTYQRIGHLKNFGFVDETTVVAPGINGKMNEISAAFGLLQLQH
IDNAIAQRSAIDAQYRQRLSDVRGIRCVARPAHSSANYAYFPVLVQDHYPLSRDALYHLMREHGILVRRYFYPLISDFPM
YRALPSSAPAWLPVARSVAAQVLCLPIFPGLSSDQVDTVADLIAGQQAT

Sequences:

>Translated_369_residues
MPIPVTSPLLPPLEEFLPYLERIWTSRIVSNGGEMHRALERALCDYLGVPHLALLTNGTTALITALQALRITGEVITTPY
SFVATAHSLLWKSITPVFVDIDPLTLNMDPSKIEAAITPQTTAIMPVHCYGTACDTTAITRIADIYNLKVIYDAAHAFGV
RDDGGSLLRHGDLSVLSFHATKVFNTFEGGAIVCPDQKTYQRIGHLKNFGFVDETTVVAPGINGKMNEISAAFGLLQLQH
IDNAIAQRSAIDAQYRQRLSDVRGIRCVARPAHSSANYAYFPVLVQDHYPLSRDALYHLMREHGILVRRYFYPLISDFPM
YRALPSSAPAWLPVARSVAAQVLCLPIFPGLSSDQVDTVADLIAGQQAT
>Mature_368_residues
PIPVTSPLLPPLEEFLPYLERIWTSRIVSNGGEMHRALERALCDYLGVPHLALLTNGTTALITALQALRITGEVITTPYS
FVATAHSLLWKSITPVFVDIDPLTLNMDPSKIEAAITPQTTAIMPVHCYGTACDTTAITRIADIYNLKVIYDAAHAFGVR
DDGGSLLRHGDLSVLSFHATKVFNTFEGGAIVCPDQKTYQRIGHLKNFGFVDETTVVAPGINGKMNEISAAFGLLQLQHI
DNAIAQRSAIDAQYRQRLSDVRGIRCVARPAHSSANYAYFPVLVQDHYPLSRDALYHLMREHGILVRRYFYPLISDFPMY
RALPSSAPAWLPVARSVAAQVLCLPIFPGLSSDQVDTVADLIAGQQAT

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=384, Percent_Identity=29.9479166666667, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI2367285, Length=327, Percent_Identity=29.6636085626911, Blast_Score=108, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 40527; Mature: 40396

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIPVTSPLLPPLEEFLPYLERIWTSRIVSNGGEMHRALERALCDYLGVPHLALLTNGTT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCHH
ALITALQALRITGEVITTPYSFVATAHSLLWKSITPVFVDIDPLTLNMDPSKIEAAITPQ
HHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCEEEECCCEEECCCHHHHEEEECCC
TTAIMPVHCYGTACDTTAITRIADIYNLKVIYDAAHAFGVRDDGGSLLRHGDLSVLSFHA
CEEEEEEEECCCCCCHHHHHHHHHHHHEEEEEEHHHHCCCCCCCCCCEECCCCEEEEHHH
TKVFNTFEGGAIVCPDQKTYQRIGHLKNFGFVDETTVVAPGINGKMNEISAAFGLLQLQH
HHHHHCCCCCEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
IDNAIAQRSAIDAQYRQRLSDVRGIRCVARPAHSSANYAYFPVLVQDHYPLSRDALYHLM
HHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEEEEECCCCCCHHHHHHHH
REHGILVRRYFYPLISDFPMYRALPSSAPAWLPVARSVAAQVLCLPIFPGLSSDQVDTVA
HHCCHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCHHHHHH
DLIAGQQAT
HHHCCCCCC
>Mature Secondary Structure 
PIPVTSPLLPPLEEFLPYLERIWTSRIVSNGGEMHRALERALCDYLGVPHLALLTNGTT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCHH
ALITALQALRITGEVITTPYSFVATAHSLLWKSITPVFVDIDPLTLNMDPSKIEAAITPQ
HHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCEEEECCCEEECCCHHHHEEEECCC
TTAIMPVHCYGTACDTTAITRIADIYNLKVIYDAAHAFGVRDDGGSLLRHGDLSVLSFHA
CEEEEEEEECCCCCCHHHHHHHHHHHHEEEEEEHHHHCCCCCCCCCCEECCCCEEEEHHH
TKVFNTFEGGAIVCPDQKTYQRIGHLKNFGFVDETTVVAPGINGKMNEISAAFGLLQLQH
HHHHHCCCCCEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
IDNAIAQRSAIDAQYRQRLSDVRGIRCVARPAHSSANYAYFPVLVQDHYPLSRDALYHLM
HHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEEEEECCCCCCHHHHHHHH
REHGILVRRYFYPLISDFPMYRALPSSAPAWLPVARSVAAQVLCLPIFPGLSSDQVDTVA
HHCCHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCHHHHHH
DLIAGQQAT
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]