| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is rpoN [H]
Identifier: 84624102
GI number: 84624102
Start: 2717575
End: 2718978
Strand: Direct
Name: rpoN [H]
Synonym: XOO_2445
Alternate gene names: 84624102
Gene position: 2717575-2718978 (Clockwise)
Preceding gene: 84624101
Following gene: 84624103
Centisome position: 55.01
GC content: 66.95
Gene sequence:
>1404_bases ATGAAGACGACCATTTCCGCCCAGCTTGGCCAGCAACTGCACCTCACCCCGCAGTTGTTGCAGTCGATCCGTCTGTTGCA ATTGGACGGCATGCAGTTGGAACTGGAAATCCGTCGTGCGCTGGAAACCAATCCGTTGCTGGAGTTGGAAGAGCTGGCCG ATAACGGGGACGAGGCCACCACCAACGACGATGGCGCCAGCGATATCGCCGCGTTCGACGAGCTTCCGGAAAGCACGATG TGGGACGTGCAGAGCAGCAGCTGGAACGATGGCGACGACGATCGCATGCAGCGCGTAGCCGCCGGCGAGTCCACCGACCC GCACGTGCGCATCCTGCGCGAATTGGCGCTGGATCTGGACGAGGCGGCGTTGGGGGCCGCCGCGTTCTGGCTGGAGCAGA CCGACGACGCCGGGTATCTGACCGAAGCGCTGCCCATGCTGCAGCAGCTGGGCGCCACCCGTCTGGGTATGACCGTGCAG GCCGTGGAAGCGATCCGTCAGCGTCTGCTGCACGGTGACCCGGCCGGCCTGGCCGCCTGCGATCTGCGCGAGTGTCTGCA AGCGCAGCTGCGTGCCCTGCCCGGCCGTGTGCCGGCACGCCACCTGGCGGCGCGCATCCTGGACGGCGATCTGGAGCTGC TGGCGGCGCATGACTACGCGGTGCTCGCGCGTGCGCACGATGCCGAGGTGGACGATACGCGCGAAGCGGTGCGGCTGATC CTGTCGCTGCAACCGCGCCCGGGCGACGACCTGCTGCAGGAAAGCAACGCCAGCGTGATTCCGGATGTGCTCGCCTGGCA TGCCGACGGCAGCTGGCGCGTCGCACTTAATCCGGCCACCACCCATCGCGTCAGCATCAACCCGGTGCACGAACGCGCGC TGGCCGAAGCCGGCGAGGCAGCACAGCCGTTGCGCGACATGCTGCAGGAAGCGCGCTGGCTGACTCGCGGGCTGTCGATG CGCTACGAGACCCTGCTGCGTGCAACGCGCGCCATCGTCGAACGCCAGGCCGCCTTCCTGGCGCGTGGCGAAGAAGCGAT GGCACCGCTGACGCTGAAAGAAATCGCCGACAAGATCGGCATGCACGAATCGACGATCTCGCGCATCACCACCGGCAAAT ACATCCAGACCCCGCGCGGCACCTTCGAGCTCAAGCACTTCTTCGCCGTGCGGCTGGAAGGCGCCAGCGTCTCCGGCCAG GCCGTCAAGGCGATGGTGCGTCGCTTGATCGAAAGCGAGCCGGCCGGTCGGCCGTTGGCCGACGAGGCCATTGCCGGATT GCTGTCGCGGCAAGGCGTTCACATTGCGCGCCGCACCGTCGCCAAGTACCGCGAACAACTGGATATCGCCCCGGCACGCG AGCGCCGCCGCACCACCAAACCGCTGCTTGCCCGGGCAGGATAA
Upstream 100 bases:
>100_bases ATGAGTCACCTTACCTGACTCCCTGATTAGAAACCCATCGCGTGGTCCTGCAAGATGCATTCCATCGCTGCTGCGTGCAG CGCCCTTCGGAAGCGCTTCC
Downstream 100 bases:
>100_bases GGACTACTATGAGCAAACTCACCGTGCTGCTGGTCGACGACCACGAGGGCTTCATCAACGCTGCGATGCGTCATTTTCGC AAAGTCGAGTGGCTCAATAT
Product: RNA polymerase sigma-54 factor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues MKTTISAQLGQQLHLTPQLLQSIRLLQLDGMQLELEIRRALETNPLLELEELADNGDEATTNDDGASDIAAFDELPESTM WDVQSSSWNDGDDDRMQRVAAGESTDPHVRILRELALDLDEAALGAAAFWLEQTDDAGYLTEALPMLQQLGATRLGMTVQ AVEAIRQRLLHGDPAGLAACDLRECLQAQLRALPGRVPARHLAARILDGDLELLAAHDYAVLARAHDAEVDDTREAVRLI LSLQPRPGDDLLQESNASVIPDVLAWHADGSWRVALNPATTHRVSINPVHERALAEAGEAAQPLRDMLQEARWLTRGLSM RYETLLRATRAIVERQAAFLARGEEAMAPLTLKEIADKIGMHESTISRITTGKYIQTPRGTFELKHFFAVRLEGASVSGQ AVKAMVRRLIESEPAGRPLADEAIAGLLSRQGVHIARRTVAKYREQLDIAPARERRRTTKPLLARAG
Sequences:
>Translated_467_residues MKTTISAQLGQQLHLTPQLLQSIRLLQLDGMQLELEIRRALETNPLLELEELADNGDEATTNDDGASDIAAFDELPESTM WDVQSSSWNDGDDDRMQRVAAGESTDPHVRILRELALDLDEAALGAAAFWLEQTDDAGYLTEALPMLQQLGATRLGMTVQ AVEAIRQRLLHGDPAGLAACDLRECLQAQLRALPGRVPARHLAARILDGDLELLAAHDYAVLARAHDAEVDDTREAVRLI LSLQPRPGDDLLQESNASVIPDVLAWHADGSWRVALNPATTHRVSINPVHERALAEAGEAAQPLRDMLQEARWLTRGLSM RYETLLRATRAIVERQAAFLARGEEAMAPLTLKEIADKIGMHESTISRITTGKYIQTPRGTFELKHFFAVRLEGASVSGQ AVKAMVRRLIESEPAGRPLADEAIAGLLSRQGVHIARRTVAKYREQLDIAPARERRRTTKPLLARAG >Mature_467_residues MKTTISAQLGQQLHLTPQLLQSIRLLQLDGMQLELEIRRALETNPLLELEELADNGDEATTNDDGASDIAAFDELPESTM WDVQSSSWNDGDDDRMQRVAAGESTDPHVRILRELALDLDEAALGAAAFWLEQTDDAGYLTEALPMLQQLGATRLGMTVQ AVEAIRQRLLHGDPAGLAACDLRECLQAQLRALPGRVPARHLAARILDGDLELLAAHDYAVLARAHDAEVDDTREAVRLI LSLQPRPGDDLLQESNASVIPDVLAWHADGSWRVALNPATTHRVSINPVHERALAEAGEAAQPLRDMLQEARWLTRGLSM RYETLLRATRAIVERQAAFLARGEEAMAPLTLKEIADKIGMHESTISRITTGKYIQTPRGTFELKHFFAVRLEGASVSGQ AVKAMVRRLIESEPAGRPLADEAIAGLLSRQGVHIARRTVAKYREQLDIAPARERRRTTKPLLARAG
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]
COG id: COG1508
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-54 factor family [H]
Homologues:
Organism=Escherichia coli, GI1789594, Length=481, Percent_Identity=39.7089397089397, Blast_Score=300, Evalue=1e-82,
Paralogues:
None
Copy number: 70 (log & stationary phase) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000394 - InterPro: IPR007046 - InterPro: IPR007634 [H]
Pfam domain/function: PF00309 Sigma54_AID; PF04963 Sigma54_CBD; PF04552 Sigma54_DBD [H]
EC number: NA
Molecular weight: Translated: 51419; Mature: 51419
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: PS00717 SIGMA54_1 ; PS00718 SIGMA54_2 ; PS50044 SIGMA54_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTTISAQLGQQLHLTPQLLQSIRLLQLDGMQLELEIRRALETNPLLELEELADNGDEAT CCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCHHHHHHHCCCCCCC TNDDGASDIAAFDELPESTMWDVQSSSWNDGDDDRMQRVAAGESTDPHVRILRELALDLD CCCCCHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCHH EAALGAAAFWLEQTDDAGYLTEALPMLQQLGATRLGMTVQAVEAIRQRLLHGDPAGLAAC HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHCCCCCCHHHH DLRECLQAQLRALPGRVPARHLAARILDGDLELLAAHDYAVLARAHDAEVDDTREAVRLI HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHEEEECCHHHHHHCCCCCCHHHHHHHHHH LSLQPRPGDDLLQESNASVIPDVLAWHADGSWRVALNPATTHRVSINPVHERALAEAGEA HHCCCCCCHHHHHCCCCCCCCHHHHEECCCCEEEEECCCCCEEEECCHHHHHHHHHCCHH AQPLRDMLQEARWLTRGLSMRYETLLRATRAIVERQAAFLARGEEAMAPLTLKEIADKIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHC MHESTISRITTGKYIQTPRGTFELKHFFAVRLEGASVSGQAVKAMVRRLIESEPAGRPLA CCHHHHHHHCCCCEEECCCCCHHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCH DEAIAGLLSRQGVHIARRTVAKYREQLDIAPARERRRTTKPLLARAG HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHHHCCC >Mature Secondary Structure MKTTISAQLGQQLHLTPQLLQSIRLLQLDGMQLELEIRRALETNPLLELEELADNGDEAT CCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCHHHHHHHCCCCCCC TNDDGASDIAAFDELPESTMWDVQSSSWNDGDDDRMQRVAAGESTDPHVRILRELALDLD CCCCCHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCHH EAALGAAAFWLEQTDDAGYLTEALPMLQQLGATRLGMTVQAVEAIRQRLLHGDPAGLAAC HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHCCCCCCHHHH DLRECLQAQLRALPGRVPARHLAARILDGDLELLAAHDYAVLARAHDAEVDDTREAVRLI HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHEEEECCHHHHHHCCCCCCHHHHHHHHHH LSLQPRPGDDLLQESNASVIPDVLAWHADGSWRVALNPATTHRVSINPVHERALAEAGEA HHCCCCCCHHHHHCCCCCCCCHHHHEECCCCEEEEECCCCCEEEECCHHHHHHHHHCCHH AQPLRDMLQEARWLTRGLSMRYETLLRATRAIVERQAAFLARGEEAMAPLTLKEIADKIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHC MHESTISRITTGKYIQTPRGTFELKHFFAVRLEGASVSGQAVKAMVRRLIESEPAGRPLA CCHHHHHHHCCCCEEECCCCCHHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCH DEAIAGLLSRQGVHIARRTVAKYREQLDIAPARERRRTTKPLLARAG HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8113171; 10984043 [H]