| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is insI1 [C]
Identifier: 84623824
GI number: 84623824
Start: 2403955
End: 2404941
Strand: Direct
Name: insI1 [C]
Synonym: XOO_2166
Alternate gene names: 84623824
Gene position: 2403955-2404941 (Clockwise)
Preceding gene: 84623821
Following gene: 84623825
Centisome position: 48.66
GC content: 62.82
Gene sequence:
>987_bases GTGGCGTCTTGCAGCCTGACGTCAGTTCGTCCAGCATCGTCTTATCCAGTTCCACTTGCCTGCTCCTCTCCGGTCCGGGC CAGTCGCTTGTCAAAGGGCAGTTACACAGTTCAATTTACAGACTCGCGTGCGCCCAGCACGATCAGCCGCGAACTGCGCC GCAACCAGCACGCTGCGCGGTACCGGCCCGATCACGCGCAGCGCATCAGCGAGCATCGGCGCACACAGGCCAGCCGGCGT CCACGCATCGACGCTGAGCGTATCCGTCAGATCGAGGTCCTGCTGAGGGAGGACGTCAGTCCCGAACAGATCGCCGGTCG CACCGGCTTGGCCAGTCACGAATGGATCTATCGGCACATCGACGCCGATCAGAAGCGCGGTGGTCAGTTATTCATGCATC TACGCAAACGCCGCCGCAAGCGCCGTCGGCGTGGCGTGCGCGATGGCCGCGGGCAGCTGACGCATCGGCGCAGCTGGACA CAGCGCCCCAGTGTGGTTGAGCAGCGAAGCCGTATCGGCGACTGGGAGCTGGAGACCATCAGGGCCTCACACGGAAAGGG CGTGGTGGTCAGCATGACCGAACGCCGCAGTCGCCTGCATCTGCTGGCTTACTCGCCCGACGGCACCGCCGAGAACGTGC GCAACGCCATTGTCCAGCGACTGGGCGGCCTGCGCCATGCAGTTCACACCCTCACCGCCGACAACGGCAAGGAGTTCGCC GATCATCGGCTCATTGCCGCCTGCCTGCAGAGCGATTTCTATTTCGCAGATCCGTACTGCCCATGGCAGCGCGGCAGCAA CGAGAATGCCAACGGATTGACACGCCAATACCTGCCACGGCAGACCGATGTCAGCACCATCACCGATGCGCACCTGCGAT GGATCGAGCAGCGGCTCTACAATCGTCCGCGCAAGATACTTGGATTCAAAACGCCCCTCGAAGTCTTCTCCGAGGAGGTC CTCAACAGCGTTGCGAATCGGAGTTGA
Upstream 100 bases:
>100_bases CGCCCATGCGGCGCATGGCCCACATGGGCTTGCATCTCCGCCTCCAACGAGCGATTGATCATGTGCTGCAACATTTGCGA AAACAGCTTCTCCACGTCCT
Downstream 100 bases:
>100_bases ATTCGCCCAGGTTATTTTTGAACCTTCGTTCTGAGCGAAGCTAGCGCTGAATTTCTCTCCAGCGGCGCGAATGCAGGCGA CTCTTTTAAAATCGGCGCAC
Product: IS1112 transposase
Products: NA
Alternate protein names: Transposon TN4551 [H]
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MASCSLTSVRPASSYPVPLACSSPVRASRLSKGSYTVQFTDSRAPSTISRELRRNQHAARYRPDHAQRISEHRRTQASRR PRIDAERIRQIEVLLREDVSPEQIAGRTGLASHEWIYRHIDADQKRGGQLFMHLRKRRRKRRRRGVRDGRGQLTHRRSWT QRPSVVEQRSRIGDWELETIRASHGKGVVVSMTERRSRLHLLAYSPDGTAENVRNAIVQRLGGLRHAVHTLTADNGKEFA DHRLIAACLQSDFYFADPYCPWQRGSNENANGLTRQYLPRQTDVSTITDAHLRWIEQRLYNRPRKILGFKTPLEVFSEEV LNSVANRS
Sequences:
>Translated_328_residues MASCSLTSVRPASSYPVPLACSSPVRASRLSKGSYTVQFTDSRAPSTISRELRRNQHAARYRPDHAQRISEHRRTQASRR PRIDAERIRQIEVLLREDVSPEQIAGRTGLASHEWIYRHIDADQKRGGQLFMHLRKRRRKRRRRGVRDGRGQLTHRRSWT QRPSVVEQRSRIGDWELETIRASHGKGVVVSMTERRSRLHLLAYSPDGTAENVRNAIVQRLGGLRHAVHTLTADNGKEFA DHRLIAACLQSDFYFADPYCPWQRGSNENANGLTRQYLPRQTDVSTITDAHLRWIEQRLYNRPRKILGFKTPLEVFSEEV LNSVANRS >Mature_327_residues ASCSLTSVRPASSYPVPLACSSPVRASRLSKGSYTVQFTDSRAPSTISRELRRNQHAARYRPDHAQRISEHRRTQASRRP RIDAERIRQIEVLLREDVSPEQIAGRTGLASHEWIYRHIDADQKRGGQLFMHLRKRRRKRRRRGVRDGRGQLTHRRSWTQ RPSVVEQRSRIGDWELETIRASHGKGVVVSMTERRSRLHLLAYSPDGTAENVRNAIVQRLGGLRHAVHTLTADNGKEFAD HRLIAACLQSDFYFADPYCPWQRGSNENANGLTRQYLPRQTDVSTITDAHLRWIEQRLYNRPRKILGFKTPLEVFSEEVL NSVANRS
Specific function: Required for the transposition of the insertion element (Potential) [H]
COG id: COG2826
COG function: function code L; Transposase and inactivated derivatives, IS30 family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 integrase catalytic domain [H]
Homologues:
Organism=Escherichia coli, GI1786450, Length=305, Percent_Identity=30.1639344262295, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1790736, Length=305, Percent_Identity=30.1639344262295, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1787671, Length=305, Percent_Identity=30.1639344262295, Blast_Score=115, Evalue=4e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009057 - InterPro: IPR012287 - InterPro: IPR001584 - InterPro: IPR012337 - InterPro: IPR001598 [H]
Pfam domain/function: PF00665 rve [H]
EC number: NA
Molecular weight: Translated: 37841; Mature: 37710
Theoretical pI: Translated: 11.64; Mature: 11.64
Prosite motif: PS50994 INTEGRASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASCSLTSVRPASSYPVPLACSSPVRASRLSKGSYTVQFTDSRAPSTISRELRRNQHAAR CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH YRPDHAQRISEHRRTQASRRPRIDAERIRQIEVLLREDVSPEQIAGRTGLASHEWIYRHI CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHC DADQKRGGQLFMHLRKRRRKRRRRGVRDGRGQLTHRRSWTQRPSVVEQRSRIGDWELETI CCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHCCCCHHHHH RASHGKGVVVSMTERRSRLHLLAYSPDGTAENVRNAIVQRLGGLRHAVHTLTADNGKEFA HHCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH DHRLIAACLQSDFYFADPYCPWQRGSNENANGLTRQYLPRQTDVSTITDAHLRWIEQRLY HHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH NRPRKILGFKTPLEVFSEEVLNSVANRS HCCHHHHCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure ASCSLTSVRPASSYPVPLACSSPVRASRLSKGSYTVQFTDSRAPSTISRELRRNQHAAR CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH YRPDHAQRISEHRRTQASRRPRIDAERIRQIEVLLREDVSPEQIAGRTGLASHEWIYRHI CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHC DADQKRGGQLFMHLRKRRRKRRRRGVRDGRGQLTHRRSWTQRPSVVEQRSRIGDWELETI CCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHCCCCHHHHH RASHGKGVVVSMTERRSRLHLLAYSPDGTAENVRNAIVQRLGGLRHAVHTLTADNGKEFA HHCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH DHRLIAACLQSDFYFADPYCPWQRGSNENANGLTRQYLPRQTDVSTITDAHLRWIEQRLY HHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH NRPRKILGFKTPLEVFSEEVLNSVANRS HCCHHHHCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2820936 [H]