| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is mrcB [H]
Identifier: 84623297
GI number: 84623297
Start: 1787800
End: 1790244
Strand: Direct
Name: mrcB [H]
Synonym: XOO_1640
Alternate gene names: 84623297
Gene position: 1787800-1790244 (Clockwise)
Preceding gene: 84623295
Following gene: 84623298
Centisome position: 36.19
GC content: 67.77
Gene sequence:
>2445_bases GTGCCCCGACGCCACGACAACGACGCTCCCGACGATTTCGAGGACGATACCAACGCGCAAGGCTCCCGCTGGCAACGCAG ACTCATCGTCTGGGGATTTGCCGCGTTCGCGCTGGCGCTCGGTTTCCTGATTCCCTATACGGTATATCTGAACAAGCAGG TCACCCAGCGCTTCGGCGAGTTGCGTTGGCAGATCCCGACCCGCGTGTACGGGCGGCCATTGGTGCTGGTGCCCGGCATC GCGCTGGATGCGGCCACGCTGAAGACCGAGCTGGATGCGGCGTCGTACAGTGACGACGGTCAGGCGAAGCTGCCTGGCAC CTATCAGCAGGACGGCAGCCGCTTCACCATCGCCAGCCGCGGCTATATCGATGTGGATGGGCATGTGCCGGCGCGCCGTA TCGACGTCAGCCTGGCGGGCGGGCGCGTGGCCACGCTGCGCGACGCCGGCGACCGCAAAGCGCTCGAAAGCGCACGCCTG GACCCGGCGCGCATTGCCACCCTGTACGGCCAAAAGCAGGAAGAACGCCGCCTGGTGCGCATGGAAGAAGTGCCCGAGCT GCTGGTCACCGGCCTGCAGGCGGTGGAAGATCGCGACTTCAACAGCCACCACGGCATCGATCTGAGTGGCATGGTGCGCG CGGCCTGGATCATGGCGCGCTCCGGCGGCCAGGTTCGCCAGGGTGCCAGCACGCTGACCCAGCAGTTGGCCCGCAGCGGC CTGCTCGGCATCGGCAAGGAACAGACGCTGACGCGCAAGTTCAACGAGATCCTGTACGCGGTGATCATGGAGGCGCGTTA CGACAAGCGCACCATCCTGGAGGCCTATCTCAACCAGGTGTATCTGGGCCAGCGCGGCGGGCAGGCGATCCACGGTGTGT CGTCGGGCGCCGAGCTGTGGTTCGGCCGCGAACTCAATTCGATGACCACCGAGCAGATCGCGTTGTTGATCGGGCTGGTC AAGGGGCCGTCGTACTACGACCCGCGGCGCAACCCGGAGCGCGCGCTGGACCGGCGCAATTTCGTGCTCGGCAAGCTGCA CGAAAACAACCTGATCAACGACGCCGAGTACAAGCGCGCGCTGGCCGCGCCGCTGGGCGTGCCCACCGAGCCCGGCCTGG TCGCAGCCAATCGTTTCCCCGCCTATGTGGACTTGGTGCGGCGCCAGCTGGCGCACGATTACCCGGAAGGCGTCCTGCAG GGCGCCGGCATGAGCGTGCTCACGGGCATGTCGCCGTCTGCGCAGGCGTATGCCGAAGGGGCGGTCACCGGCACCATCAA GCGGCTGGACAACAAGAAGCGCCCGCCGCTGCAGGCCGGGCTGGTGCTCACCGACGTGCACAACGGCGATGTGCTGGCGG TGGTCGGCAGCCGCGAGGTGGCCAAGCCGGGCTTCAATCGTGCGGTGGAAGCGCAGCGGCAGGTGGGCTCGTTGCTCAAG CCGTTCGTGTACATGCTGGCGCTGGCCTCGCCGGACCGCTGGGCGCTGTCCAGCTGGGTCGACGACTCGCCGGTCACCGT GCAGCTCAGCCGCGGCAGGACCTGGTCGCCCGGCAATTCCGACAACCGCAGCCACGGCACTGTGCGTCTGGTCGATGCGC TGGCGCATTCCTACAACCAGGCCACGGTGCGGGTGGGCATGCAGGTCGGCGCAGACCGCATCGCGCAACTGATCCAGGTC TTGGCCGGCATCAAGGCCGAGCCCAATCCGGCCTTGATCCTGGGCACGACCGACCAGAGCCCGTATGGCATGGCGCAGCT TTACCAGTTCCTGGCGGCCGGCGGCGAGATCCAGCCGCTGCACGCGGTGCGCGGTGTGCTCGATCCGCAGGGCAAGCTGC TCAAGCGCTACGACAAGACCCCGGCACCGGCGCAGGAAGGCGATTCGGTGGCTGCCAACCTGATCAGCATCGGTCTGCAG CAGGTAGTCAGCAACGGTACCGCGCGCCAGCTGCTGGGCGATGGCCTGGGTCGCTTGTCGTCGGCCGGCAAGACCGGTAC CTCCAACGATGGTCGCGACAGTTGGTATGCCGGCTATACCGGCGACCACCTGGCGGTGATCTGGATGGGCAACGACCAGA ACGCCGAGACCGGCCTGTATGGCGCCACCGGCGCGATGCGGGTGTGGTCGAGCATCTTCGCCCGCCTGCCGAGTGCGCCA TTGAAGGTCAGCGGCAGAGGCCTGGATTGGCAGTGGGTGGACGCCAGCGGTACCGGCGTGACCGACCCCGGTTGCCCGGG CGCGCGCCAGTTCCCGTTCGTGGTCGGCTTCACGCCGGCCTACGCCCCGTGTGCCGGCAATGCACCATCGATCGAAGCTG CGCCCGGCGAAGCGGCCGCACCCGCCGAACAATCCAGCGGCGGTGGCTGGCGCCGCTTCTTCGGTCTGGAAAAGAAGCCC GAACAACCCGCCCCGGCGCCTGCCACGGCCCCACCGGCGCATTGA
Upstream 100 bases:
>100_bases GGTCGTTTTGTTAGCGGCTCTTAACGGTCGACGGGTGCGGTGGGTCACAGCCATGACAGCGCTGCGCTAGACTCGCCGGA CTCTACATCCTCGCATTCCT
Downstream 100 bases:
>100_bases TTTGGAGTCACCCATGAACCGAATGCACCGTTTGCTGGTCATGATCGCCGTATCGGCCGCAGTCACCGCCTGCGTCACCG CACCGCCCGCACCGCCACCG
Product: penicillin-binding protein 1B
Products: NA
Alternate protein names: PBP-1b; PBP1b; Murein polymerase; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Peptidoglycan glycosyltransferase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 814; Mature: 813
Protein sequence:
>814_residues MPRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTVYLNKQVTQRFGELRWQIPTRVYGRPLVLVPGI ALDAATLKTELDAASYSDDGQAKLPGTYQQDGSRFTIASRGYIDVDGHVPARRIDVSLAGGRVATLRDAGDRKALESARL DPARIATLYGQKQEERRLVRMEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSG LLGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELWFGRELNSMTTEQIALLIGLV KGPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRALAAPLGVPTEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQ GAGMSVLTGMSPSAQAYAEGAVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSREVAKPGFNRAVEAQRQVGSLLK PFVYMLALASPDRWALSSWVDDSPVTVQLSRGRTWSPGNSDNRSHGTVRLVDALAHSYNQATVRVGMQVGADRIAQLIQV LAGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPLHAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQ QVVSNGTARQLLGDGLGRLSSAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAP LKVSGRGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAAPAEQSSGGGWRRFFGLEKKP EQPAPAPATAPPAH
Sequences:
>Translated_814_residues MPRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTVYLNKQVTQRFGELRWQIPTRVYGRPLVLVPGI ALDAATLKTELDAASYSDDGQAKLPGTYQQDGSRFTIASRGYIDVDGHVPARRIDVSLAGGRVATLRDAGDRKALESARL DPARIATLYGQKQEERRLVRMEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSG LLGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELWFGRELNSMTTEQIALLIGLV KGPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRALAAPLGVPTEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQ GAGMSVLTGMSPSAQAYAEGAVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSREVAKPGFNRAVEAQRQVGSLLK PFVYMLALASPDRWALSSWVDDSPVTVQLSRGRTWSPGNSDNRSHGTVRLVDALAHSYNQATVRVGMQVGADRIAQLIQV LAGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPLHAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQ QVVSNGTARQLLGDGLGRLSSAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAP LKVSGRGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAAPAEQSSGGGWRRFFGLEKKP EQPAPAPATAPPAH >Mature_813_residues PRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTVYLNKQVTQRFGELRWQIPTRVYGRPLVLVPGIA LDAATLKTELDAASYSDDGQAKLPGTYQQDGSRFTIASRGYIDVDGHVPARRIDVSLAGGRVATLRDAGDRKALESARLD PARIATLYGQKQEERRLVRMEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSGL LGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELWFGRELNSMTTEQIALLIGLVK GPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRALAAPLGVPTEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQG AGMSVLTGMSPSAQAYAEGAVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSREVAKPGFNRAVEAQRQVGSLLKP FVYMLALASPDRWALSSWVDDSPVTVQLSRGRTWSPGNSDNRSHGTVRLVDALAHSYNQATVRVGMQVGADRIAQLIQVL AGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPLHAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQQ VVSNGTARQLLGDGLGRLSSAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAPL KVSGRGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAAPAEQSSGGGWRRFFGLEKKPE QPAPAPATAPPAH
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=700, Percent_Identity=36.1428571428571, Blast_Score=394, Evalue=1e-110, Organism=Escherichia coli, GI87082258, Length=411, Percent_Identity=30.4136253041363, Blast_Score=144, Evalue=2e-35, Organism=Escherichia coli, GI1788867, Length=547, Percent_Identity=27.4223034734918, Blast_Score=119, Evalue=1e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011813 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: =2.4.1.129 [H]
Molecular weight: Translated: 87874; Mature: 87743
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTVYLNKQVTQRFGE CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH LRWQIPTRVYGRPLVLVPGIALDAATLKTELDAASYSDDGQAKLPGTYQQDGSRFTIASR HEEECCHHHCCCCEEEECCCEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEC GYIDVDGHVPARRIDVSLAGGRVATLRDAGDRKALESARLDPARIATLYGQKQEERRLVR CEEEECCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHH MEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSG HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC LLGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELW CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEE FGRELNSMTTEQIALLIGLVKGPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRA ECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHH LAAPLGVPTEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQGAGMSVLTGMSPSAQAYAEG HHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHHCCCCCEEECCCCCHHHHHCC AVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSREVAKPGFNRAVEAQRQVGSLLK CHHHHHHHHCCCCCCCHHHCEEEEEECCCCEEEEECCCHHCCCCCHHHHHHHHHHHHHHH PFVYMLALASPDRWALSSWVDDSPVTVQLSRGRTWSPGNSDNRSHGTVRLVDALAHSYNQ HHHHHHHHCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC ATVRVGMQVGADRIAQLIQVLAGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPL EEEEEHHHHCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCHH HAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQQVVSNGTARQLLGDGLGRLS HHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH SAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAP CCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC LKVSGRGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAA EEECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC PAEQSSGGGWRRFFGLEKKPEQPAPAPATAPPAH CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PRRHDNDAPDDFEDDTNAQGSRWQRRLIVWGFAAFALALGFLIPYTVYLNKQVTQRFGE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH LRWQIPTRVYGRPLVLVPGIALDAATLKTELDAASYSDDGQAKLPGTYQQDGSRFTIASR HEEECCHHHCCCCEEEECCCEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEC GYIDVDGHVPARRIDVSLAGGRVATLRDAGDRKALESARLDPARIATLYGQKQEERRLVR CEEEECCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHCCCHHHHHHHHCCCHHHHHHHH MEEVPELLVTGLQAVEDRDFNSHHGIDLSGMVRAAWIMARSGGQVRQGASTLTQQLARSG HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC LLGIGKEQTLTRKFNEILYAVIMEARYDKRTILEAYLNQVYLGQRGGQAIHGVSSGAELW CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEE FGRELNSMTTEQIALLIGLVKGPSYYDPRRNPERALDRRNFVLGKLHENNLINDAEYKRA ECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHH LAAPLGVPTEPGLVAANRFPAYVDLVRRQLAHDYPEGVLQGAGMSVLTGMSPSAQAYAEG HHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHHCCCCCEEECCCCCHHHHHCC AVTGTIKRLDNKKRPPLQAGLVLTDVHNGDVLAVVGSREVAKPGFNRAVEAQRQVGSLLK CHHHHHHHHCCCCCCCHHHCEEEEEECCCCEEEEECCCHHCCCCCHHHHHHHHHHHHHHH PFVYMLALASPDRWALSSWVDDSPVTVQLSRGRTWSPGNSDNRSHGTVRLVDALAHSYNQ HHHHHHHHCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC ATVRVGMQVGADRIAQLIQVLAGIKAEPNPALILGTTDQSPYGMAQLYQFLAAGGEIQPL EEEEEHHHHCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCHH HAVRGVLDPQGKLLKRYDKTPAPAQEGDSVAANLISIGLQQVVSNGTARQLLGDGLGRLS HHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH SAGKTGTSNDGRDSWYAGYTGDHLAVIWMGNDQNAETGLYGATGAMRVWSSIFARLPSAP CCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC LKVSGRGLDWQWVDASGTGVTDPGCPGARQFPFVVGFTPAYAPCAGNAPSIEAAPGEAAA EEECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC PAEQSSGGGWRRFFGLEKKPEQPAPAPATAPPAH CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]