Click here to switch to the map view.

The map label for this gene is yubD [H]

Identifier: 84623268

GI number: 84623268

Start: 1754664

End: 1755365

Strand: Direct

Name: yubD [H]

Synonym: XOO_1611

Alternate gene names: 84623268

Gene position: 1754664-1755365 (Clockwise)

Preceding gene: 84623267

Following gene: 84623275

Centisome position: 35.52

GC content: 67.52

Gene sequence:

>702_bases
ATGAAAAACCAGCTCCTGCAGGGCGACGCCCTGACCATCATGCCCACGCTCGAAGCGAATTCGTTCGACGCACTGATCAC
TGATCCGCCGTATGCGAGTGGCGGCCTGACCGCCGCTGCCCGTGCCCGGCCGCCATCGACCAAGTACTGCCGAGATGGCG
GGCACGCTGACTTCGTTGGCGACGAGCGCGACCAGCGTGGCCACCTGGCGTGGATGCAGCTGTGGCTATCGGAGTGCGCG
CGTCTTTTGAAGGAGGGAGCGCCGGTGCTGCTGTTTACCGACTGGCGGCAGCTGCCGCTTACGACCGACGCGCTGCAGGC
GGCCGGCTTCAAATGGCGCGGCGTCGCCGTCTGGGACAAGACGGAGGGCGTGCGTCCGCAGCTGGGGCGGTTCCGCAACC
AGGCCGAATACATTGTGTGGGGTAGCAAGGGCGGCATGCCGTTGGATCGCCGCGCGCCGGTGCTGCCGGGCGTGGTGCGG
ACACCGGTGCTCAAGGCTGACAAGCATCACCTGACCGGCAAGCCCACCGAATTGATGCGCAGCCTGGTGCGGATCTGTGA
AGCGGGCGGCCGGATCCTGGATCCGTTCGCAGGCAGCGGCACGACGCTTGTGGCGGCGGAGCTGGAGGGCTACCGCTGGA
CCGGTGTGGAGATGACGCAGCACTACGCCGACGTCGCGCGCGCGCGCGTTGCTGCTCTGTGA

Upstream 100 bases:

>100_bases
GAAATCCAGATCAAGTGCCCACGCTGCGGCACGCTCAATCACCTGAAGGCCGAGAGCCTCACCTCCGATCGCCGCGAGCG
AATCCAAGAAGGCTCTCACC

Downstream 100 bases:

>100_bases
GTGTGATGGGGCGGGGGGACCCGCCCTAATCATTTTGTGGTGATAACTCGCGGAGCGAAAGCGTTGTCAGCTCAGCAGCG
ACGTGTCAGTAACATCCAAT

Product: site-specific DNA-methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MKNQLLQGDALTIMPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGDERDQRGHLAWMQLWLSECA
RLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAVWDKTEGVRPQLGRFRNQAEYIVWGSKGGMPLDRRAPVLPGVVR
TPVLKADKHHLTGKPTELMRSLVRICEAGGRILDPFAGSGTTLVAAELEGYRWTGVEMTQHYADVARARVAAL

Sequences:

>Translated_233_residues
MKNQLLQGDALTIMPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGDERDQRGHLAWMQLWLSECA
RLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAVWDKTEGVRPQLGRFRNQAEYIVWGSKGGMPLDRRAPVLPGVVR
TPVLKADKHHLTGKPTELMRSLVRICEAGGRILDPFAGSGTTLVAAELEGYRWTGVEMTQHYADVARARVAAL
>Mature_233_residues
MKNQLLQGDALTIMPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVGDERDQRGHLAWMQLWLSECA
RLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAVWDKTEGVRPQLGRFRNQAEYIVWGSKGGMPLDRRAPVLPGVVR
TPVLKADKHHLTGKPTELMRSLVRICEAGGRILDPFAGSGTTLVAAELEGYRWTGVEMTQHYADVARARVAAL

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: NA

Molecular weight: Translated: 25605; Mature: 25605

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQLLQGDALTIMPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVG
CCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCHHCCCCCCCHHHCCCCCCCCCC
DERDQRGHLAWMQLWLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAVWDK
CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCEECEEEEECC
TEGVRPQLGRFRNQAEYIVWGSKGGMPLDRRAPVLPGVVRTPVLKADKHHLTGKPTELMR
CCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHH
SLVRICEAGGRILDPFAGSGTTLVAAELEGYRWTGVEMTQHYADVARARVAAL
HHHHHHHCCCCEECCCCCCCCEEEEEECCCEEECCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNQLLQGDALTIMPTLEANSFDALITDPPYASGGLTAAARARPPSTKYCRDGGHADFVG
CCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCHHCCCCCCCHHHCCCCCCCCCC
DERDQRGHLAWMQLWLSECARLLKEGAPVLLFTDWRQLPLTTDALQAAGFKWRGVAVWDK
CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCEECEEEEECC
TEGVRPQLGRFRNQAEYIVWGSKGGMPLDRRAPVLPGVVRTPVLKADKHHLTGKPTELMR
CCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHH
SLVRICEAGGRILDPFAGSGTTLVAAELEGYRWTGVEMTQHYADVARARVAAL
HHHHHHHCCCCEECCCCCCCCEEEEEECCCEEECCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10366527 [H]