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The map label for this gene is rhsD [H]

Identifier: 84623180

GI number: 84623180

Start: 1675429

End: 1677231

Strand: Direct

Name: rhsD [H]

Synonym: XOO_1523

Alternate gene names: 84623180

Gene position: 1675429-1677231 (Clockwise)

Preceding gene: 84623179

Following gene: 84623181

Centisome position: 33.91

GC content: 66.89

Gene sequence:

>1803_bases
GTGGCCTATCGCTACGTGGAAGGCGACCTGGTGGCAGCCGAGGACGCGCTCGGCGCACCGCGCAGGTTCGTCTACCGCCA
GCACCGCCTGCTGCAGCACACCGACCGGGTGGGCCTGTCGTTCTATTACGACTACGACCGGCAGTGGCGCGTGGTGCATA
GCTGGGGCGACGGCGGCTTGTACGACTACCGCTTCGCCTATGACGACCTGCTGCGCGAGACCGCAGTGACCGATTCGCTG
GGACATGTCTCGTTGGTGAAGTTCGACGAGAACCGCCTGCCGTTGTGCGAGATCGACCCGATGGACGGCGTCACCGTGTT
CGCGTACGACGCGGTTGGCCGCACCGTGGCGGTCACCGATCCGGAAGGGCTGTGCACACGCTTCGACTATGACGAGCGCG
GCAATCTGCGCACGCTCACGCGCCCGGACGGCAGCACGCTGCGCCAGACCTTCGATGACGACGACCGCCTGATCGCCGTC
GCCGATCCGGATGGCCATGCCTGGCAGCAACGTCACGACGCGCGTGGCTTGCTGGTGGAGCAGACCGATCCACTGGGAGC
AACGGCGCAGTATGTCTACGACGATCATGGCCAGCTGCGCGCGCACACCAATGCGCGCGGCGCGACCACGCGACTGGAGT
ACGACCGCTACGGCCTGCTGGCCGCGCTGATCGACGCGCTGGGGCAGCGCAGCCACTTCGCGCACGATGCACTGGGCCGG
CTGCGCAGCCAGTACGATCCGCTCGGCCATGCCAGCACGTACGAGTACGACGCCAAGGGAAGGCTGGTGCGGCTGCGCTC
GCCCGGCGGCGGCGAGGTGCAGTGCGAGTACGACGCCGAAGACCAGCTTGTCCGTTATGTGGACGAAGCGGGCGCGCAGA
CCCGGCTGCAGTACGTCGGCATCGGCCAGATCGGCAAGCGCCTGCAGGCCGACGGGCACACGGTGGAGTATCGCTACGAC
AGCGAGGAACAGCTGGTCGCGGTGATCAACCAGCGTGGCGAACGCTATGAGCTCAAGCGCGATGCGCTGGGCCGCATCGT
CGAGGAAGTGGATTACTGGGGCCAGGCCCGCCGCTACGACTACGATGCCTCCGGTCGCCTGACCGCGACATACGACCCGC
TGGGTCAGCGGATTGCCTATGCCACCGACCCGCTCGGCCGGATCGTGCGCAAGACGCTGGCCGACGTGCGCCAGCCGGGC
CAGCAGCTGCAGGAGCATTTCGTCTACGACCGCCGCGGGCAACTGGTCGAATTGCGCAACCCGCATCGCAGCGCCACCCG
TCGTTTCGATGCCTTGGGCCAGCTGCTGGAAGAAGTGCAGGACGGCTTCCGGGTCGGCTACGGCTACGACGCGGTGGGCA
ATCGCGTCTTGCGCGAGACCTCGGCCGGCAATCGCATCGCCTTCGGCTACGACCTGCGCGACCAGGTGGTGTCGGTGGCG
ATCAACGACGACGCCCCGCTCCTGATCGAGCGCGACGCGCTTGGGCGCGCCACCCGCGAGCAACTCAGCGCGCAGGTCGA
ACGCCGTTTCGCCTACGACGGCCGCAGCCTGCTCACCGCCCAGGCGGTGCTCAAGGACGCGGTGCCGCTGTTCGAAACCC
ACTACGACTATGACCGCGCCGGCAACCTGACCCACCGACGTCCCCCAAGTTTGAGTAGCACCTCAGTTTGGAGTCCAATT
CCCTACCCCGAGGAGATTGGACGTGAAGAAGCGCTTTTCCGAAGAGCAGATCATCGGCTTCCTGCGCGAAGCCGAGGCCG
GCATGCCGATCAAGGACCTGTGCCGACGGCATGGCTTCAGTGA

Upstream 100 bases:

>100_bases
CACGGCTTTGCAGGGTGAATCGTGGTGGTCCAGGATTTTAGAGCAGTTGAATGAAGGCTTACTTTAAGTTCGCCCGGCCA
CTGGCCTGAGCCACTCGCTG

Downstream 100 bases:

>100_bases
GGCGTCCTACTACCTGTGGCGCAGCAAGTTCGGCGGCATGAGCGTGCCCGATGCCAAGCGGTTCAAGGACCTGGAGGCCG
AGAACACGCGACTGAAGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 600; Mature: 599

Protein sequence:

>600_residues
MAYRYVEGDLVAAEDALGAPRRFVYRQHRLLQHTDRVGLSFYYDYDRQWRVVHSWGDGGLYDYRFAYDDLLRETAVTDSL
GHVSLVKFDENRLPLCEIDPMDGVTVFAYDAVGRTVAVTDPEGLCTRFDYDERGNLRTLTRPDGSTLRQTFDDDDRLIAV
ADPDGHAWQQRHDARGLLVEQTDPLGATAQYVYDDHGQLRAHTNARGATTRLEYDRYGLLAALIDALGQRSHFAHDALGR
LRSQYDPLGHASTYEYDAKGRLVRLRSPGGGEVQCEYDAEDQLVRYVDEAGAQTRLQYVGIGQIGKRLQADGHTVEYRYD
SEEQLVAVINQRGERYELKRDALGRIVEEVDYWGQARRYDYDASGRLTATYDPLGQRIAYATDPLGRIVRKTLADVRQPG
QQLQEHFVYDRRGQLVELRNPHRSATRRFDALGQLLEEVQDGFRVGYGYDAVGNRVLRETSAGNRIAFGYDLRDQVVSVA
INDDAPLLIERDALGRATREQLSAQVERRFAYDGRSLLTAQAVLKDAVPLFETHYDYDRAGNLTHRRPPSLSSTSVWSPI
PYPEEIGREEALFRRADHRLPARSRGRHADQGPVPTAWLQ

Sequences:

>Translated_600_residues
MAYRYVEGDLVAAEDALGAPRRFVYRQHRLLQHTDRVGLSFYYDYDRQWRVVHSWGDGGLYDYRFAYDDLLRETAVTDSL
GHVSLVKFDENRLPLCEIDPMDGVTVFAYDAVGRTVAVTDPEGLCTRFDYDERGNLRTLTRPDGSTLRQTFDDDDRLIAV
ADPDGHAWQQRHDARGLLVEQTDPLGATAQYVYDDHGQLRAHTNARGATTRLEYDRYGLLAALIDALGQRSHFAHDALGR
LRSQYDPLGHASTYEYDAKGRLVRLRSPGGGEVQCEYDAEDQLVRYVDEAGAQTRLQYVGIGQIGKRLQADGHTVEYRYD
SEEQLVAVINQRGERYELKRDALGRIVEEVDYWGQARRYDYDASGRLTATYDPLGQRIAYATDPLGRIVRKTLADVRQPG
QQLQEHFVYDRRGQLVELRNPHRSATRRFDALGQLLEEVQDGFRVGYGYDAVGNRVLRETSAGNRIAFGYDLRDQVVSVA
INDDAPLLIERDALGRATREQLSAQVERRFAYDGRSLLTAQAVLKDAVPLFETHYDYDRAGNLTHRRPPSLSSTSVWSPI
PYPEEIGREEALFRRADHRLPARSRGRHADQGPVPTAWLQ
>Mature_599_residues
AYRYVEGDLVAAEDALGAPRRFVYRQHRLLQHTDRVGLSFYYDYDRQWRVVHSWGDGGLYDYRFAYDDLLRETAVTDSLG
HVSLVKFDENRLPLCEIDPMDGVTVFAYDAVGRTVAVTDPEGLCTRFDYDERGNLRTLTRPDGSTLRQTFDDDDRLIAVA
DPDGHAWQQRHDARGLLVEQTDPLGATAQYVYDDHGQLRAHTNARGATTRLEYDRYGLLAALIDALGQRSHFAHDALGRL
RSQYDPLGHASTYEYDAKGRLVRLRSPGGGEVQCEYDAEDQLVRYVDEAGAQTRLQYVGIGQIGKRLQADGHTVEYRYDS
EEQLVAVINQRGERYELKRDALGRIVEEVDYWGQARRYDYDASGRLTATYDPLGQRIAYATDPLGRIVRKTLADVRQPGQ
QLQEHFVYDRRGQLVELRNPHRSATRRFDALGQLLEEVQDGFRVGYGYDAVGNRVLRETSAGNRIAFGYDLRDQVVSVAI
NDDAPLLIERDALGRATREQLSAQVERRFAYDGRSLLTAQAVLKDAVPLFETHYDYDRAGNLTHRRPPSLSSTSVWSPIP
YPEEIGREEALFRRADHRLPARSRGRHADQGPVPTAWLQ

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786706, Length=476, Percent_Identity=30.4621848739496, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1790020, Length=429, Percent_Identity=26.1072261072261, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI48994942, Length=429, Percent_Identity=25.8741258741259, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI1786917, Length=440, Percent_Identity=25, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 68293; Mature: 68162

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYRYVEGDLVAAEDALGAPRRFVYRQHRLLQHTDRVGLSFYYDYDRQWRVVHSWGDGGL
CCEEEECCCEEECHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEECCCCE
YDYRFAYDDLLRETAVTDSLGHVSLVKFDENRLPLCEIDPMDGVTVFAYDAVGRTVAVTD
EEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEECCCCEEEEEC
PEGLCTRFDYDERGNLRTLTRPDGSTLRQTFDDDDRLIAVADPDGHAWQQRHDARGLLVE
CCCCEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHCCCCEEEE
QTDPLGATAQYVYDDHGQLRAHTNARGATTRLEYDRYGLLAALIDALGQRSHFAHDALGR
CCCCCCCCEEEEECCCCCEEEECCCCCCEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHH
LRSQYDPLGHASTYEYDAKGRLVRLRSPGGGEVQCEYDAEDQLVRYVDEAGAQTRLQYVG
HHHHCCCCCCCCCEEECCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHCCCHHEEEEEE
IGQIGKRLQADGHTVEYRYDSEEQLVAVINQRGERYELKRDALGRIVEEVDYWGQARRYD
HHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
YDASGRLTATYDPLGQRIAYATDPLGRIVRKTLADVRQPGQQLQEHFVYDRRGQLVELRN
CCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEECC
PHRSATRRFDALGQLLEEVQDGFRVGYGYDAVGNRVLRETSAGNRIAFGYDLRDQVVSVA
CCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCEEEEEECHHCCEEEEE
INDDAPLLIERDALGRATREQLSAQVERRFAYDGRSLLTAQAVLKDAVPLFETHYDYDRA
ECCCCCEEEECHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHCCCCCCC
GNLTHRRPPSLSSTSVWSPIPYPEEIGREEALFRRADHRLPARSRGRHADQGPVPTAWLQ
CCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHCCCCCHHCCCCCCCCCCCHHCCC
>Mature Secondary Structure 
AYRYVEGDLVAAEDALGAPRRFVYRQHRLLQHTDRVGLSFYYDYDRQWRVVHSWGDGGL
CEEEECCCEEECHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEECCCCE
YDYRFAYDDLLRETAVTDSLGHVSLVKFDENRLPLCEIDPMDGVTVFAYDAVGRTVAVTD
EEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCCEEEEEEECCCCEEEEEC
PEGLCTRFDYDERGNLRTLTRPDGSTLRQTFDDDDRLIAVADPDGHAWQQRHDARGLLVE
CCCCEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHCCCCEEEE
QTDPLGATAQYVYDDHGQLRAHTNARGATTRLEYDRYGLLAALIDALGQRSHFAHDALGR
CCCCCCCCEEEEECCCCCEEEECCCCCCEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHH
LRSQYDPLGHASTYEYDAKGRLVRLRSPGGGEVQCEYDAEDQLVRYVDEAGAQTRLQYVG
HHHHCCCCCCCCCEEECCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHCCCHHEEEEEE
IGQIGKRLQADGHTVEYRYDSEEQLVAVINQRGERYELKRDALGRIVEEVDYWGQARRYD
HHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
YDASGRLTATYDPLGQRIAYATDPLGRIVRKTLADVRQPGQQLQEHFVYDRRGQLVELRN
CCCCCCEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEECC
PHRSATRRFDALGQLLEEVQDGFRVGYGYDAVGNRVLRETSAGNRIAFGYDLRDQVVSVA
CCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCEEEEEECHHCCEEEEE
INDDAPLLIERDALGRATREQLSAQVERRFAYDGRSLLTAQAVLKDAVPLFETHYDYDRA
ECCCCCEEEECHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHCCCCCCC
GNLTHRRPPSLSSTSVWSPIPYPEEIGREEALFRRADHRLPARSRGRHADQGPVPTAWLQ
CCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHCCCCCHHCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1766878; 9278503; 2644231; 2403547; 7934896 [H]