BacMap

Definition	Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome.
Accession	NC_007705
Length	4,940,217

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The map label for this gene is 84622947

Identifier: 84622947

GI number: 84622947

Start: 1415281

End: 1415700

Strand: Direct

Name: 84622947

Synonym: XOO_1290

Alternate gene names: NA

Gene position: 1415281-1415700 (Clockwise)

Preceding gene: 84622929

Following gene: 84622948

Centisome position: 28.65

GC content: 60.71

Gene sequence:

>420_bases
ATGTTCGCCCTCGCCCCGCTCCGCAAGGGCGAGCGCATCATTCAGTACAAGGGTCGCCTGCGCACGCATGCCGAAGTGGA
CGCCGACGACACCGGCGACGTAGAGAGCGGGCATACCTTTCTATTTACGCTCAGCGACGATTACGTGCTGGATGCCAACT
ACGAAGGCAATGTCGCGCGCTGGATCAACCACAGCTGCGATCCCAATTGCGAAGCGGTGATTGAAGAGGCCGAGGGCGAC
GACCGCCGCAAGGACAAGATCTTCATCGAGGCCAAGCGCGACATCAAGCCCGGCGAAGAGCTCACCTATAACTACGGCAT
CACGCTCGCCGAGCGCCATACGCCGCGCCTGAAGAAGATCTGGGAATGCCGTTGCGGCTCGAAGAATTGCACCGGAACGA
TGCTGCAGCCCAAGCGCTGA

Upstream 100 bases:

>100_bases
GCGCATCAGCGCACTGCGGTCACAATGAGCGGCCCCATCACTGGACCCTTACATGTCGCGCAAAGTTGCCGCCCGCAAGT
CACGTATCCACGGCAATGGC

Downstream 100 bases:

>100_bases
GCGTGCAGGAGGGCGTTATCCACTGACGTCACGCACACATCGTTTCATGGGTGCGCAACAGCGCGCTTGCCGGGGTTTTG
GTCTCCTTTTACGAGGAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: Histone-Lysine N-Methyltransferase; SET Domain-Containing Protein; SET Domain Protein; Set Domain Protein; HistoNe-Lysine N-Methyltransferase H3 Lysine-4 Specific; Setd1a Protein; Nuclear Protein Set; Zinc Finger Protein

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MFALAPLRKGERIIQYKGRLRTHAEVDADDTGDVESGHTFLFTLSDDYVLDANYEGNVARWINHSCDPNCEAVIEEAEGD
DRRKDKIFIEAKRDIKPGEELTYNYGITLAERHTPRLKKIWECRCGSKNCTGTMLQPKR

Sequences:

>Translated_139_residues
MFALAPLRKGERIIQYKGRLRTHAEVDADDTGDVESGHTFLFTLSDDYVLDANYEGNVARWINHSCDPNCEAVIEEAEGD
DRRKDKIFIEAKRDIKPGEELTYNYGITLAERHTPRLKKIWECRCGSKNCTGTMLQPKR
>Mature_139_residues
MFALAPLRKGERIIQYKGRLRTHAEVDADDTGDVESGHTFLFTLSDDYVLDANYEGNVARWINHSCDPNCEAVIEEAEGD
DRRKDKIFIEAKRDIKPGEELTYNYGITLAERHTPRLKKIWECRCGSKNCTGTMLQPKR

Specific function: Unknown

COG id: COG2940

COG function: function code R; Proteins containing SET domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI210032580, Length=136, Percent_Identity=34.5588235294118, Blast_Score=82, Evalue=1e-16,
Organism=Homo sapiens, GI55741677, Length=136, Percent_Identity=33.0882352941176, Blast_Score=77, Evalue=4e-15,
Organism=Homo sapiens, GI19913358, Length=131, Percent_Identity=35.1145038167939, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI19913350, Length=131, Percent_Identity=35.1145038167939, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI19913348, Length=131, Percent_Identity=35.1145038167939, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI109633019, Length=131, Percent_Identity=35.1145038167939, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI156142199, Length=132, Percent_Identity=36.3636363636364, Blast_Score=74, Evalue=4e-14,
Organism=Homo sapiens, GI156142197, Length=132, Percent_Identity=36.3636363636364, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI21361095, Length=113, Percent_Identity=39.8230088495575, Blast_Score=73, Evalue=8e-14,
Organism=Homo sapiens, GI23510384, Length=113, Percent_Identity=39.8230088495575, Blast_Score=73, Evalue=8e-14,
Organism=Homo sapiens, GI56550039, Length=131, Percent_Identity=34.3511450381679, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI4507321, Length=153, Percent_Identity=28.7581699346405, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI19923586, Length=136, Percent_Identity=36.0294117647059, Blast_Score=71, Evalue=3e-13,
Organism=Homo sapiens, GI27477095, Length=136, Percent_Identity=36.0294117647059, Blast_Score=71, Evalue=3e-13,
Organism=Homo sapiens, GI13375930, Length=143, Percent_Identity=30.0699300699301, Blast_Score=71, Evalue=3e-13,
Organism=Homo sapiens, GI301171597, Length=143, Percent_Identity=30.0699300699301, Blast_Score=71, Evalue=3e-13,
Organism=Homo sapiens, GI301171588, Length=143, Percent_Identity=30.0699300699301, Blast_Score=71, Evalue=3e-13,
Organism=Homo sapiens, GI91718902, Length=135, Percent_Identity=32.5925925925926, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI19923202, Length=112, Percent_Identity=40.1785714285714, Blast_Score=70, Evalue=5e-13,
Organism=Homo sapiens, GI13699811, Length=136, Percent_Identity=34.5588235294118, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI224465233, Length=132, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=3e-12,
Organism=Homo sapiens, GI7662046, Length=131, Percent_Identity=35.1145038167939, Blast_Score=68, Evalue=3e-12,
Organism=Homo sapiens, GI110349788, Length=133, Percent_Identity=33.8345864661654, Blast_Score=67, Evalue=6e-12,
Organism=Homo sapiens, GI301171613, Length=109, Percent_Identity=34.8623853211009, Blast_Score=66, Evalue=8e-12,
Organism=Homo sapiens, GI301171605, Length=109, Percent_Identity=34.8623853211009, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193210440, Length=135, Percent_Identity=36.2962962962963, Blast_Score=81, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17552316, Length=136, Percent_Identity=33.8235294117647, Blast_Score=76, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17552320, Length=136, Percent_Identity=33.8235294117647, Blast_Score=73, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17552318, Length=136, Percent_Identity=33.8235294117647, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71993684, Length=130, Percent_Identity=33.0769230769231, Blast_Score=72, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17565204, Length=149, Percent_Identity=30.2013422818792, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193210201, Length=89, Percent_Identity=37.0786516853933, Blast_Score=66, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6321911, Length=136, Percent_Identity=38.2352941176471, Blast_Score=79, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24639197, Length=135, Percent_Identity=36.2962962962963, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571451, Length=135, Percent_Identity=36.2962962962963, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI19550184, Length=131, Percent_Identity=33.587786259542, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17136556, Length=131, Percent_Identity=33.587786259542, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI62472551, Length=131, Percent_Identity=33.587786259542, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17136558, Length=131, Percent_Identity=33.587786259542, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19550181, Length=131, Percent_Identity=33.587786259542, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI221331070, Length=100, Percent_Identity=43, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24662251, Length=100, Percent_Identity=43, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI18543183, Length=138, Percent_Identity=34.7826086956522, Blast_Score=70, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24647050, Length=143, Percent_Identity=32.1678321678322, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24650756, Length=132, Percent_Identity=34.0909090909091, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17737643, Length=130, Percent_Identity=31.5384615384615, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15949; Mature: 15949

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50280 SET ; PS50868 POST_SET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFALAPLRKGERIIQYKGRLRTHAEVDADDTGDVESGHTFLFTLSDDYVLDANYEGNVAR
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCE
WINHSCDPNCEAVIEEAEGDDRRKDKIFIEAKRDIKPGEELTYNYGITLAERHTPRLKKI
EECCCCCCCHHHHEECCCCCCCCCCEEEEEECCCCCCCCCEEEECCEEEECCCCCHHHHH
WECRCGSKNCTGTMLQPKR
HHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFALAPLRKGERIIQYKGRLRTHAEVDADDTGDVESGHTFLFTLSDDYVLDANYEGNVAR
CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCE
WINHSCDPNCEAVIEEAEGDDRRKDKIFIEAKRDIKPGEELTYNYGITLAERHTPRLKKI
EECCCCCCCHHHHEECCCCCCCCCCEEEEEECCCCCCCCCEEEECCEEEECCCCCHHHHH
WECRCGSKNCTGTMLQPKR
HHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA