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The map label for this gene is ybaV [C]

Identifier: 84622864

GI number: 84622864

Start: 1313396

End: 1313728

Strand: Direct

Name: ybaV [C]

Synonym: XOO_1207

Alternate gene names: 84622864

Gene position: 1313396-1313728 (Clockwise)

Preceding gene: 84622862

Following gene: 84622866

Centisome position: 26.59

GC content: 56.16

Gene sequence:

>333_bases
ATGAAGTCATTTACCGTAGTCCTGAAGTCCCTGCTACTGGCGTTGCTGTTGTCCTCGAATGCGTATGCACTCGACAAGGT
CGATATCAACACTGCGTCTGCTGAGGAATTGGACAAGGTGCTGGTGAATGTCGGGCGATCAAAAGCCGAGGCAATCGTCG
AGCACCGTCAGGCAAACGGTCCCTTCAAAAGTGCCGAGGAACTGGCACTGGTCAAGGGCATCGGACTCAAGACGGTCGAA
CGGAATCGTGACCTGATCGAAGTAGGAGCCACGATGGCTCCTGCCAAGAAGGCTGCCAAGGGGGCGGCGGTGAAACCGGT
GGGACGGCGTTAA

Upstream 100 bases:

>100_bases
AGTTTGTTGGCGATAGGATTGCTGCATGTGGCGCGGGACACTGGCTCCGCCGGCAGGAATGCTGGCTAGGACCATCACCC
AAGCCACAAGGAGCGTTGCA

Downstream 100 bases:

>100_bases
GGGGAATGGATCCGAGATACGGTTCGACGCGAGGATGCGTGGCCGCAACCTAACTGGACAGGATGTCCGGGGGGATGGCT
GGAAGCCGACAAGGACGTGG

Product: DNA transport competence protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MKSFTVVLKSLLLALLLSSNAYALDKVDINTASAEELDKVLVNVGRSKAEAIVEHRQANGPFKSAEELALVKGIGLKTVE
RNRDLIEVGATMAPAKKAAKGAAVKPVGRR

Sequences:

>Translated_110_residues
MKSFTVVLKSLLLALLLSSNAYALDKVDINTASAEELDKVLVNVGRSKAEAIVEHRQANGPFKSAEELALVKGIGLKTVE
RNRDLIEVGATMAPAKKAAKGAAVKPVGRR
>Mature_110_residues
MKSFTVVLKSLLLALLLSSNAYALDKVDINTASAEELDKVLVNVGRSKAEAIVEHRQANGPFKSAEELALVKGIGLKTVE
RNRDLIEVGATMAPAKKAAKGAAVKPVGRR

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=57, Percent_Identity=52.6315789473684, Blast_Score=60, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11682; Mature: 11682

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSFTVVLKSLLLALLLSSNAYALDKVDINTASAEELDKVLVNVGRSKAEAIVEHRQANG
CCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCC
PFKSAEELALVKGIGLKTVERNRDLIEVGATMAPAKKAAKGAAVKPVGRR
CCCCHHHHHHHHCCCCHHHHCCCCHHHHCCCCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKSFTVVLKSLLLALLLSSNAYALDKVDINTASAEELDKVLVNVGRSKAEAIVEHRQANG
CCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCC
PFKSAEELALVKGIGLKTVERNRDLIEVGATMAPAKKAAKGAAVKPVGRR
CCCCHHHHHHHHCCCCHHHHCCCCHHHHCCCCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]