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The map label for this gene is tdcF [C]

Identifier: 84622778

GI number: 84622778

Start: 1215936

End: 1216439

Strand: Direct

Name: tdcF [C]

Synonym: XOO_1121

Alternate gene names: 84622778

Gene position: 1215936-1216439 (Clockwise)

Preceding gene: 84622777

Following gene: 84622779

Centisome position: 24.61

GC content: 61.51

Gene sequence:

>504_bases
ATGCTCCGTTCCATCACGACCGTTATCGCCGCTGCAATGCTGTGGTCTGCCAGTGTCGGCGCCGCGCACGCCGCCGAGGT
GATCCGCCACAAGATTCCCAACAGCGATTTCCCCATTGCTGCCGCGGTGGAAATTCCCGCCGGCAAGGCCACGGTGTATC
TCAGCGGCAAGGTGCCGGCGGTGATCGATCCCAATGCGCCAAAGGATTCCGCTGCCACCTATGGCGACACCAAGGCGCAA
ACGGTGAGCGTGTTGAACCAGATCAAACAGCAGCTGGCCACGCTTGGGTTGGGCATGGGCGATGTGGTGAAGATGCAGGC
GTTTCTGGTCGGCGACCCGGCCATGGGCGGCAAGATGGATTTCGATGGCTTCATGGAAGGGTATCGCCAGTTCTTCGGTA
CCAAGGAGCAGCCCAATCTGCCGGCACGCTCGGCGTTCCAGATCGCGGCATTGGGTAACCCGCTGTACCGGGTCGAGATC
GAAGTTGTCGCTGTGCGTCCCTGA

Upstream 100 bases:

>100_bases
TTACGTGCGGACTCACTTCGGTAACGACCATGCCGAGCCCGTGACCATCGACGACGTCAAATCGCTCCGCCACTGATCTT
CTCTCATACAAGGAATTGCC

Downstream 100 bases:

>100_bases
GTCCGCGTCGCCATCCTGCTGGAGGATGTCATGAAAACCGCTCTTTCGCGCCGCACGTTTCTACGCGACTGCGCGTTGTT
TTCCGGCGCCGCCGGTGCAG

Product: TdcF protein

Products: NA

Alternate protein names: TdcF Protein; Translation Initiation Inhibitor; Endoribonuclease; Endoribonuclease L-PSP Family; Endonuclease L-PSP Endoribonuclease; Endoribonuclease L-Psp; Endoribonuclease L-PSP Family Protein; Endoribonuclease L-PSP Superfamily

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MLRSITTVIAAAMLWSASVGAAHAAEVIRHKIPNSDFPIAAAVEIPAGKATVYLSGKVPAVIDPNAPKDSAATYGDTKAQ
TVSVLNQIKQQLATLGLGMGDVVKMQAFLVGDPAMGGKMDFDGFMEGYRQFFGTKEQPNLPARSAFQIAALGNPLYRVEI
EVVAVRP

Sequences:

>Translated_167_residues
MLRSITTVIAAAMLWSASVGAAHAAEVIRHKIPNSDFPIAAAVEIPAGKATVYLSGKVPAVIDPNAPKDSAATYGDTKAQ
TVSVLNQIKQQLATLGLGMGDVVKMQAFLVGDPAMGGKMDFDGFMEGYRQFFGTKEQPNLPARSAFQIAALGNPLYRVEI
EVVAVRP
>Mature_167_residues
MLRSITTVIAAAMLWSASVGAAHAAEVIRHKIPNSDFPIAAAVEIPAGKATVYLSGKVPAVIDPNAPKDSAATYGDTKAQ
TVSVLNQIKQQLATLGLGMGDVVKMQAFLVGDPAMGGKMDFDGFMEGYRQFFGTKEQPNLPARSAFQIAALGNPLYRVEI
EVVAVRP

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17645; Mature: 17645

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRSITTVIAAAMLWSASVGAAHAAEVIRHKIPNSDFPIAAAVEIPAGKATVYLSGKVPA
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCE
VIDPNAPKDSAATYGDTKAQTVSVLNQIKQQLATLGLGMGDVVKMQAFLVGDPAMGGKMD
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEECCCCCCCCCC
FDGFMEGYRQFFGTKEQPNLPARSAFQIAALGNPLYRVEIEVVAVRP
HHHHHHHHHHHCCCCCCCCCCCCHHEEEEECCCCEEEEEEEEEEECC
>Mature Secondary Structure
MLRSITTVIAAAMLWSASVGAAHAAEVIRHKIPNSDFPIAAAVEIPAGKATVYLSGKVPA
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCE
VIDPNAPKDSAATYGDTKAQTVSVLNQIKQQLATLGLGMGDVVKMQAFLVGDPAMGGKMD
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEECCCCCCCCCC
FDGFMEGYRQFFGTKEQPNLPARSAFQIAALGNPLYRVEIEVVAVRP
HHHHHHHHHHHCCCCCCCCCCCCHHEEEEECCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA