| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is 84622711
Identifier: 84622711
GI number: 84622711
Start: 1149177
End: 1150235
Strand: Direct
Name: 84622711
Synonym: XOO_1054
Alternate gene names: NA
Gene position: 1149177-1150235 (Clockwise)
Preceding gene: 84622708
Following gene: 84622712
Centisome position: 23.26
GC content: 62.13
Gene sequence:
>1059_bases GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC CCTGAGGAGCTTCGACTGA
Upstream 100 bases:
>100_bases TCATTGCCTAGCGCGTGAAGGGCTTGTCAACTGTTAAAATTTGATTGTTAATACGAAGGCGCAGACATGCGTCCAAGTGC CCGTCGGCAGGGGAGTTACC
Downstream 100 bases:
>100_bases TGGCAAGAATCAATCTATTGCCCTGGCGCGCGGAGCGCCGAAAGGCACGCGAGCGCGAGTTCTATTCGATGCTGGGCTTC GCCGCATTGGGCGGGCTGCT
Product: fimbrial assembly membrane protein
Products: NA
Alternate protein names: Type IV Pilus Biogenesis Protein PilM; Type 4 Fimbrial Biogenesis Protein PilM; Tfp Pilus Assembly Protein ATPase PilM; Fimbrial Assembly Membrane Protein; Type Iv Pilus Assembly Protein Pilm; Type IV Pili Biogenesis Protein PilM; Tfp Pilus Assembly Protein; Fimbrial Assembly Protein PilM; Type IV Pilus Assembly Protein; Type IV Fimbrial Biogenesis Protein PilM; Tfp Pilus Assembly Protein ATPase PilM-Like Protein; Response Regulator Receiver Domain Protein; Response Regulator Receiver Domain-Containing Protein; Protein FtsA; PilM Type IV Pilus Assembly Protein; Fimbrial Assembly Protein; Type IV Pilus Biogenesis Protein TapM; Type 4 Fimbrial Biogenesis Protein; Pili Assembly Protein; Competence Protein PilM; Type IV Pilus Biogenesis ATPase PilM
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA QMTLGPKVQAHVLALDAPALMIATGLALRSFD
Sequences:
>Translated_352_residues MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA QMTLGPKVQAHVLALDAPALMIATGLALRSFD >Mature_351_residues GLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAAV AGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELGG LTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEEA GLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLAQ MTLGPKVQAHVLALDAPALMIATGLALRSFD
Specific function: Unknown
COG id: COG4972
COG function: function code NU; Tfp pilus assembly protein, ATPase PilM
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37713; Mature: 37582
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVG CCCCCCCCCCEEEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHCCHHHHHHHH EAIRRAINRSGSKAKNAAAAVAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEE HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHH VNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELGGLTAKVMDVEAFAVENAFAL CCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH VASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE HHHCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHH AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALAR CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHH LPEMVEEQLGVTTVVANPLAQMTLGPKVQAHVLALDAPALMIATGLALRSFD HHHHHHHHCCEEHHHHCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCC >Mature Secondary Structure GLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVG CCCCCCCCCEEEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHCCHHHHHHHH EAIRRAINRSGSKAKNAAAAVAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEE HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHH VNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELGGLTAKVMDVEAFAVENAFAL CCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH VASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE HHHCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHH AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALAR CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHH LPEMVEEQLGVTTVVANPLAQMTLGPKVQAHVLALDAPALMIATGLALRSFD HHHHHHHHCCEEHHHHCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA