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The map label for this gene is rpoZ [H]

Identifier: 84622702

GI number: 84622702

Start: 1137080

End: 1137379

Strand: Direct

Name: rpoZ [H]

Synonym: XOO_1045

Alternate gene names: 84622702

Gene position: 1137080-1137379 (Clockwise)

Preceding gene: 84622701

Following gene: 84622703

Centisome position: 23.02

GC content: 62.0

Gene sequence:

>300_bases
ATGGCCCGCATTACCGTAGAAGATTGCCTGGAAGTCGTGAACAACCGTTTTGAGCTGGTCATGATGGCCTCCAAGCGCGC
CCGTCAGCTCGCCAACGGCGTACAGCCGCTGATCGAAAATGCCGCTGCCAGCGACAAGCCCACCGTGATGGCGCTGCGCG
AGATCGCCGCACGCCGGATCGATAATGCGCTGATCGACGAAGTCGAGAAGGCCGAGCGCGAACGTGCCGAGCGCGAAGCG
TTGGAGTGGGCCGCCGCCGAAGTGGTCGCCGACGAAGACATGTCCAAGAACGACGATTGA

Upstream 100 bases:

>100_bases
AAACTGAATAGGCGCCGGTTGCCGTGGCGCCGGGCCCGGCGTACACTTCGCCCCTTTCCCTCATTCGATGCGCGGCCGTT
GCTGGTCGCCGGGAGCCCGC

Downstream 100 bases:

>100_bases
TTGCTCGCATCGCTGCGATCGACCCAAACAGCCCGCCTAGACGCGGGCTGTTTTCGTTTCGGGCCCCTGCAGTACGCTGG
CGTGTGCAAACGTTTGCCGT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENAAASDKPTVMALREIAARRIDNALIDEVEKAERERAEREA
LEWAAAEVVADEDMSKNDD

Sequences:

>Translated_99_residues
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENAAASDKPTVMALREIAARRIDNALIDEVEKAERERAEREA
LEWAAAEVVADEDMSKNDD
>Mature_98_residues
ARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENAAASDKPTVMALREIAARRIDNALIDEVEKAERERAEREAL
EWAAAEVVADEDMSKNDD

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

Organism=Escherichia coli, GI1790081, Length=67, Percent_Identity=47.7611940298507, Blast_Score=60, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 11099; Mature: 10967

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENAAASDKPTVMALREIAARRI
CCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
DNALIDEVEKAERERAEREALEWAAAEVVADEDMSKNDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENAAASDKPTVMALREIAARRI
CCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
DNALIDEVEKAERERAEREALEWAAAEVVADEDMSKNDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]