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The map label for this gene is 84489968

Identifier: 84489968

GI number: 84489968

Start: 1345747

End: 1346226

Strand: Direct

Name: 84489968

Synonym: Msp_1176

Alternate gene names: NA

Gene position: 1345747-1346226 (Clockwise)

Preceding gene: 84489964

Following gene: 84489969

Centisome position: 76.14

GC content: 25.42

Gene sequence:

>480_bases
TTGAAAATTAAAAAAAGAAATTTCTTGAAAAATAAAAAAATTAAAGAGATTAAAGAAGAACTAGGAAATTACAGTATAAT
CATTCCTAAAAAAGCAAAGGTAGAATTATTAAAAATAGAAGATTTACCAAATATTCTTTTAATAAATGGAGAACCACTTT
TAATGCAGACAGAAAATAAAATAATACCAACACTTAAAGCTGTTCTATCATTAGAAATTACAGAAAAATATGCTACAGTA
GATATGGGTGCTATAAATTTTGTTATTAAAGGTGCAGATATTATGTCACCCGGTATTGTTGATGCAGATAAAACAATAGT
TGCTGGTGAAACTATAGTTATTATTGAAGAAACACATAAAAAACCAATTGCTATTGGAACTAGTTTAATTTCTGGTGAAG
AAATGATTGAAAATAGTAAAGGTAAAGCTATTGAAAATTTACATTATGTTGGAGATACTATTTGGGACTTAAAAATATAG

Upstream 100 bases:

>100_bases
AATAGAAATATAAATTATTTAGACTAATAAACAATTGCAAAAAAACAAAAATAATTATATAAAAAAAATCATAATCTAAT
CTTAAAGGTGGATTGAGAAA

Downstream 100 bases:

>100_bases
GAGTTAAAAATAGAATGTCTTCAAATAATATTAAATTAAAATATGATTCAGGAAATATATTATCTAAAGATGTACATAGT
ATAGGAATCATTGCATTAGG

Product: putative RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MKIKKRNFLKNKKIKEIKEELGNYSIIIPKKAKVELLKIEDLPNILLINGEPLLMQTENKIIPTLKAVLSLEITEKYATV
DMGAINFVIKGADIMSPGIVDADKTIVAGETIVIIEETHKKPIAIGTSLISGEEMIENSKGKAIENLHYVGDTIWDLKI

Sequences:

>Translated_159_residues
MKIKKRNFLKNKKIKEIKEELGNYSIIIPKKAKVELLKIEDLPNILLINGEPLLMQTENKIIPTLKAVLSLEITEKYATV
DMGAINFVIKGADIMSPGIVDADKTIVAGETIVIIEETHKKPIAIGTSLISGEEMIENSKGKAIENLHYVGDTIWDLKI
>Mature_159_residues
MKIKKRNFLKNKKIKEIKEELGNYSIIIPKKAKVELLKIEDLPNILLINGEPLLMQTENKIIPTLKAVLSLEITEKYATV
DMGAINFVIKGADIMSPGIVDADKTIVAGETIVIIEETHKKPIAIGTSLISGEEMIENSKGKAIENLHYVGDTIWDLKI

Specific function: Unknown

COG id: COG2016

COG function: function code J; Predicted RNA-binding protein (contains PUA domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Homo sapiens, GI7662502, Length=136, Percent_Identity=35.2941176470588, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI212276121, Length=136, Percent_Identity=35.2941176470588, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI25153759, Length=137, Percent_Identity=32.8467153284672, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6320844, Length=141, Percent_Identity=36.8794326241135, Blast_Score=91, Evalue=1e-19,
Organism=Drosophila melanogaster, GI18858169, Length=139, Percent_Identity=28.0575539568345, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022430
- InterPro:   IPR015266
- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR016437
- InterPro:   IPR004521 [H]

Pfam domain/function: PF01472 PUA [H]

EC number: NA

Molecular weight: Translated: 17692; Mature: 17692

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKKRNFLKNKKIKEIKEELGNYSIIIPKKAKVELLKIEDLPNILLINGEPLLMQTENK
CCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCEEEEEECCCCCEEEECCCEEEEECCCC
IIPTLKAVLSLEITEKYATVDMGAINFVIKGADIMSPGIVDADKTIVAGETIVIIEETHK
HHHHHHHHHEEEECCCEEEEECCCEEEEEECCCCCCCCCCCCCCEEEECCEEEEEECCCC
KPIAIGTSLISGEEMIENSKGKAIENLHYVGDTIWDLKI
CCEEEEEEECCCHHHHHCCCCCCCHHEEECCCEEEEECC
>Mature Secondary Structure
MKIKKRNFLKNKKIKEIKEELGNYSIIIPKKAKVELLKIEDLPNILLINGEPLLMQTENK
CCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCEEEEEECCCCCEEEECCCEEEEECCCC
IIPTLKAVLSLEITEKYATVDMGAINFVIKGADIMSPGIVDADKTIVAGETIVIIEETHK
HHHHHHHHHEEEECCCEEEEECCCEEEEEECCCCCCCCCCCCCCEEEECCEEEEEECCCC
KPIAIGTSLISGEEMIENSKGKAIENLHYVGDTIWDLKI
CCEEEEEEECCCHHHHHCCCCCCCHHEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]