| Definition | Methanosphaera stadtmanae DSM 3091 chromosome, complete genome. |
|---|---|
| Accession | NC_007681 |
| Length | 1,767,403 |
Click here to switch to the map view.
The map label for this gene is 84489901
Identifier: 84489901
GI number: 84489901
Start: 1259784
End: 1260125
Strand: Direct
Name: 84489901
Synonym: Msp_1107
Alternate gene names: NA
Gene position: 1259784-1260125 (Clockwise)
Preceding gene: 84489900
Following gene: 84489902
Centisome position: 71.28
GC content: 36.55
Gene sequence:
>342_bases ATGACACTAAAAAGAAGAAGACTATCTAAAAGGAATCATGATATTGATCCTATGTCTTCTGCAGTTAATATGACTGATGT AATGTTAGTTTTAGCTGTGGGCTTTCTAATATTTGCAGTTATGGCAACAGGTGCTCAGAATATTATAAATAGTGACATGT CTCCCCAAGAAAAACAGTCAGCAATGCAAGCTGCACAACAAACAACAGAACTTGATGAAGAAACCACACCATTAGATACC AAACCTGAAGAGATTCAAAGTAGTGGTTCTGGATACCAGGAAAGAGGTAAAGTATACCAAGACCCAAGTACTGGAAAACT AGTTCTGGTTAAATCATCATGA
Upstream 100 bases:
>100_bases GTAGTTTATGTTTTGTAATATCAAAAATACGCAGTAGATGGTATGAAGAAGATTTAGCCATGCTATATGATTTATCAGAA ACTATTCTTGAGGTGATGTA
Downstream 100 bases:
>100_bases AAAGAAAATACTATTTTTTGGATATGAATAGGACTTTCCTATTCAATATTTTTATATTATAAATAGATGATGAAATATTA AGTGTATATGTTATTTTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 113; Mature: 112
Protein sequence:
>113_residues MTLKRRRLSKRNHDIDPMSSAVNMTDVMLVLAVGFLIFAVMATGAQNIINSDMSPQEKQSAMQAAQQTTELDEETTPLDT KPEEIQSSGSGYQERGKVYQDPSTGKLVLVKSS
Sequences:
>Translated_113_residues MTLKRRRLSKRNHDIDPMSSAVNMTDVMLVLAVGFLIFAVMATGAQNIINSDMSPQEKQSAMQAAQQTTELDEETTPLDT KPEEIQSSGSGYQERGKVYQDPSTGKLVLVKSS >Mature_112_residues TLKRRRLSKRNHDIDPMSSAVNMTDVMLVLAVGFLIFAVMATGAQNIINSDMSPQEKQSAMQAAQQTTELDEETTPLDTK PEEIQSSGSGYQERGKVYQDPSTGKLVLVKSS
Specific function: Unknown
COG id: COG4744
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12420; Mature: 12289
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.2 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.4 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLKRRRLSKRNHDIDPMSSAVNMTDVMLVLAVGFLIFAVMATGAQNIINSDMSPQEKQS CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH AMQAAQQTTELDEETTPLDTKPEEIQSSGSGYQERGKVYQDPSTGKLVLVKSS HHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCEEEEEECC >Mature Secondary Structure TLKRRRLSKRNHDIDPMSSAVNMTDVMLVLAVGFLIFAVMATGAQNIINSDMSPQEKQS CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH AMQAAQQTTELDEETTPLDTKPEEIQSSGSGYQERGKVYQDPSTGKLVLVKSS HHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA