| Definition | Methanosphaera stadtmanae DSM 3091 chromosome, complete genome. |
|---|---|
| Accession | NC_007681 |
| Length | 1,767,403 |
Click here to switch to the map view.
The map label for this gene is hsdR [H]
Identifier: 84489571
GI number: 84489571
Start: 893333
End: 896116
Strand: Direct
Name: hsdR [H]
Synonym: Msp_0767
Alternate gene names: 84489571
Gene position: 893333-896116 (Clockwise)
Preceding gene: 84489570
Following gene: 84489575
Centisome position: 50.54
GC content: 25.43
Gene sequence:
>2784_bases ATGAAATTAGTTCTAAATAATCCTGAATATAATGTTAAAGTATTAACAACAATTCAAAATGAATTACAGAAATGTGAAGA ATTTTATATTGCAGTAGCATTCATTACAGAAAGTGGAATTACACCACTACTACAAAATCTTAAGGAATTAGAACAAAAAA ATGTTAAAGGTAAGATCTTAACAACAGATTATCTAGCATTTAGTCAACCGAAGGCTTTAAAAAGATTAAATAATTTAAGT AATATTGAAGTTAGACTATATCAAGTAACTGATAGTTATGGATTTCATCCAAAAGGATATATTTTTAAAAATACCAATTA CTATAACATTCTAATAGGTAGTTCTAATCTAACACAGAAGGCATTAACTGTTAATATGGAATGGAATATATTAACAGAGT ATAGGGAAAATAATGAAATAGTATCTGATTTATCAAATTCATTTATAAAATATTGGAATAAATCAAGAAATATAGATGAA TGTATTGATGAATATGAAGCATATTATAATGAGAGTAATAAACATACATATTATCCTAAAAAAGAAATTAAAGATGAATT TAAACCTAATTCTATGCAAAAACAATTCATAGATAACTTTTTAGAAACTATAAAAACACATACAAGAGGATTACTTATAA GTGCAACAGGTACTGGTAAAACATATGCCTCAGCATTTGCACTAAGAGAAATTAATCCTAGAAAAATATTATTCTTAGTA CATAGGGAACAAATAGCTAAACAAGCAATGAACTCATATAAGAATGTCTTTAAAAATAGAAGTTATGGACTTTTCACAGG TACTTCTAAGGATTATGATGCAGACTTTATATTCAGTACCATACAGACTATGAGTCAAGAAAAGTATTATTCTAGATATG AAAAAGATGAATTTGACATAATTGTTATTGATGAAGTTCATCATGCAGGAGCACCAAGTTACCAGGAAATTATGAATTAT TTTACTCCAAAATTCTATTTAGGCATGACTGGTTCTCCAGATCGTAGTGATGAATTTGATATCTATGATCTTTTTGATCA TAATATTATATATGAAATTAGATTAAAAAAGGCTTTAGAAGAAAATATACTTTGTGATTTTCATTATTTTGGAATAAATA ATCCTGTGGATGATAATTATTTATCAGAAGGATATGTTGATGAAATTATTGAAAATATTGAATATTATGGTTTTAATGGA AATAGAGTAAAGGGATTAGTTTTTTGTAATAACGTGGATAATGCTAAAGTTTTATCAGATATGTTTAATATGCGTGGATA TAACACTATAAGTCTTAGTGGAAATAATACTCAGGATGAACGTGAAGATGCTATTAATAGACTTGTTAGTGATGATATAG ATAATACTCTTGATTATATATTCACTGTTGATATTTTTAATGAGGGTGTTGATATTATTGAAATTAATCAAATTGTAATG TTAAGACCTACACAATCAAGTATAGTATTTATCCAACAGTTGGGTCGTGGTCTTAGAAAACATTCAAATAAGGAGTATGT TGTTGTTCTTGATTTTATTGGAAATTTTGATACTAACTACATGATTCCCATTGCCCTATCTGATGATAGAACATACAATA AAGATACTATTCGTAAATTCATGTTTGATTCTAATAATCTACTTCCTGGAGCTTCAACAATTAGCTTTGATAGAATTTCA AAGGAAAAGATTTATCATTCAATTGATAATGCAACTATTAACAGTATTTCCTTTCTAAGAAATAAGTATATGAATTTTAA AAAGAAGATTGGTAGAATTCCATTATTAATTGATTTTTATAATTATGATGAACTTGATGCAATGTTTATTATTAAATATA TGAAGGAAAAACTACCCTCAAAAAAGAAGGCATATCCAGTTTTATTATCTAAACTAGATAAGAGTTTTAATAATAGTTTA TGTGAAGATGAAATTCTATATTTAGAATTTCTATCACTAAAAATAGCTAATGGTAAACGTCCACATGAATTAATTATATT AAGGGAATTAATTGAAAATAGACAAATTAGTATATATGATGTTAATAATATCTTAGAAAATAACTACTCCTTAACAGACA ATGCTCTTAGTATAAAAAGTGCTATTAAAATTCTTAGTGTATCCTATTATAAGAAGATGGAACGTACAAAGTATTCTAGG GTAAAACTTTTAGAAGTTAATAATAACATATTATTTATTCATGAAAACTTTAGAAAATTACTAGAAAATGAAATATTTAA GAAATTTATTTATGATATTATTGATATTGGATTTAAAGAATATGATTTAAAATATAGAAACCCTAGTTGTACTCCATTTA AGTTGTATGAAAAATATTCAAGAGAAGATGTGTCTCGTCTTTTAAATTGGCCAGAAAATGAGTCAACAACGATTTTTGGT TATAGAACTGTGGCAGATTTTAAGGGAAATTTATCATGTCCCATGTTTGTAACATATAATAAAAATGAGGATATTTCACA ATCCATACAATATGAGGATAAATTCATTGATAATACGACTATGTATTGGATGAGTAAACATAATAAGACTTTAGAATCTG AGGATGTTAAAACAATTATTAATTATAGGGATAATAATCTTAAAATGTATTTATTTATTAAAAAAAGTGATTCTGAAGAT GAACAATACTTCTATTATGTTGGAGAAGTTATACCTAAAGAGTATATTCCAACATGTGATAAACTAGGTAATGATATTGT ACGTTTTACTCTTAAATTAAATACATCTCTACGTGATGATATTTATGAGTATTTAGTAAATTAA
Upstream 100 bases:
>100_bases ACTAAAGAAAATACTAGAAAAATATGAAACATTCTTTAAACAAGTAGATGCATTAATTTAAAATTATTTTTTTATTAAAA AAAATAAAAGAGATATTTAT
Downstream 100 bases:
>100_bases AAAATAAAATAGGTGTGTTTAGTATATTTAATCATATACTTCTATACATTCACCTTTACATTTATCAGCTGCTTCTTGGT ATTTGGTTGGATCATCTACT
Product: helicase
Products: NA
Alternate protein names: R.EcoAI [H]
Number of amino acids: Translated: 927; Mature: 927
Protein sequence:
>927_residues MKLVLNNPEYNVKVLTTIQNELQKCEEFYIAVAFITESGITPLLQNLKELEQKNVKGKILTTDYLAFSQPKALKRLNNLS NIEVRLYQVTDSYGFHPKGYIFKNTNYYNILIGSSNLTQKALTVNMEWNILTEYRENNEIVSDLSNSFIKYWNKSRNIDE CIDEYEAYYNESNKHTYYPKKEIKDEFKPNSMQKQFIDNFLETIKTHTRGLLISATGTGKTYASAFALREINPRKILFLV HREQIAKQAMNSYKNVFKNRSYGLFTGTSKDYDADFIFSTIQTMSQEKYYSRYEKDEFDIIVIDEVHHAGAPSYQEIMNY FTPKFYLGMTGSPDRSDEFDIYDLFDHNIIYEIRLKKALEENILCDFHYFGINNPVDDNYLSEGYVDEIIENIEYYGFNG NRVKGLVFCNNVDNAKVLSDMFNMRGYNTISLSGNNTQDEREDAINRLVSDDIDNTLDYIFTVDIFNEGVDIIEINQIVM LRPTQSSIVFIQQLGRGLRKHSNKEYVVVLDFIGNFDTNYMIPIALSDDRTYNKDTIRKFMFDSNNLLPGASTISFDRIS KEKIYHSIDNATINSISFLRNKYMNFKKKIGRIPLLIDFYNYDELDAMFIIKYMKEKLPSKKKAYPVLLSKLDKSFNNSL CEDEILYLEFLSLKIANGKRPHELIILRELIENRQISIYDVNNILENNYSLTDNALSIKSAIKILSVSYYKKMERTKYSR VKLLEVNNNILFIHENFRKLLENEIFKKFIYDIIDIGFKEYDLKYRNPSCTPFKLYEKYSREDVSRLLNWPENESTTIFG YRTVADFKGNLSCPMFVTYNKNEDISQSIQYEDKFIDNTTMYWMSKHNKTLESEDVKTIINYRDNNLKMYLFIKKSDSED EQYFYYVGEVIPKEYIPTCDKLGNDIVRFTLKLNTSLRDDIYEYLVN
Sequences:
>Translated_927_residues MKLVLNNPEYNVKVLTTIQNELQKCEEFYIAVAFITESGITPLLQNLKELEQKNVKGKILTTDYLAFSQPKALKRLNNLS NIEVRLYQVTDSYGFHPKGYIFKNTNYYNILIGSSNLTQKALTVNMEWNILTEYRENNEIVSDLSNSFIKYWNKSRNIDE CIDEYEAYYNESNKHTYYPKKEIKDEFKPNSMQKQFIDNFLETIKTHTRGLLISATGTGKTYASAFALREINPRKILFLV HREQIAKQAMNSYKNVFKNRSYGLFTGTSKDYDADFIFSTIQTMSQEKYYSRYEKDEFDIIVIDEVHHAGAPSYQEIMNY FTPKFYLGMTGSPDRSDEFDIYDLFDHNIIYEIRLKKALEENILCDFHYFGINNPVDDNYLSEGYVDEIIENIEYYGFNG NRVKGLVFCNNVDNAKVLSDMFNMRGYNTISLSGNNTQDEREDAINRLVSDDIDNTLDYIFTVDIFNEGVDIIEINQIVM LRPTQSSIVFIQQLGRGLRKHSNKEYVVVLDFIGNFDTNYMIPIALSDDRTYNKDTIRKFMFDSNNLLPGASTISFDRIS KEKIYHSIDNATINSISFLRNKYMNFKKKIGRIPLLIDFYNYDELDAMFIIKYMKEKLPSKKKAYPVLLSKLDKSFNNSL CEDEILYLEFLSLKIANGKRPHELIILRELIENRQISIYDVNNILENNYSLTDNALSIKSAIKILSVSYYKKMERTKYSR VKLLEVNNNILFIHENFRKLLENEIFKKFIYDIIDIGFKEYDLKYRNPSCTPFKLYEKYSREDVSRLLNWPENESTTIFG YRTVADFKGNLSCPMFVTYNKNEDISQSIQYEDKFIDNTTMYWMSKHNKTLESEDVKTIINYRDNNLKMYLFIKKSDSED EQYFYYVGEVIPKEYIPTCDKLGNDIVRFTLKLNTSLRDDIYEYLVN >Mature_927_residues MKLVLNNPEYNVKVLTTIQNELQKCEEFYIAVAFITESGITPLLQNLKELEQKNVKGKILTTDYLAFSQPKALKRLNNLS NIEVRLYQVTDSYGFHPKGYIFKNTNYYNILIGSSNLTQKALTVNMEWNILTEYRENNEIVSDLSNSFIKYWNKSRNIDE CIDEYEAYYNESNKHTYYPKKEIKDEFKPNSMQKQFIDNFLETIKTHTRGLLISATGTGKTYASAFALREINPRKILFLV HREQIAKQAMNSYKNVFKNRSYGLFTGTSKDYDADFIFSTIQTMSQEKYYSRYEKDEFDIIVIDEVHHAGAPSYQEIMNY FTPKFYLGMTGSPDRSDEFDIYDLFDHNIIYEIRLKKALEENILCDFHYFGINNPVDDNYLSEGYVDEIIENIEYYGFNG NRVKGLVFCNNVDNAKVLSDMFNMRGYNTISLSGNNTQDEREDAINRLVSDDIDNTLDYIFTVDIFNEGVDIIEINQIVM LRPTQSSIVFIQQLGRGLRKHSNKEYVVVLDFIGNFDTNYMIPIALSDDRTYNKDTIRKFMFDSNNLLPGASTISFDRIS KEKIYHSIDNATINSISFLRNKYMNFKKKIGRIPLLIDFYNYDELDAMFIIKYMKEKLPSKKKAYPVLLSKLDKSFNNSL CEDEILYLEFLSLKIANGKRPHELIILRELIENRQISIYDVNNILENNYSLTDNALSIKSAIKILSVSYYKKMERTKYSR VKLLEVNNNILFIHENFRKLLENEIFKKFIYDIIDIGFKEYDLKYRNPSCTPFKLYEKYSREDVSRLLNWPENESTTIFG YRTVADFKGNLSCPMFVTYNKNEDISQSIQYEDKFIDNTTMYWMSKHNKTLESEDVKTIINYRDNNLKMYLFIKKSDSED EQYFYYVGEVIPKEYIPTCDKLGNDIVRFTLKLNTSLRDDIYEYLVN
Specific function: The EcoAI enzyme recognizes 5'-GAGN(7)GTCA-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG1061
COG function: function code KL; DNA or RNA helicases of superfamily II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320539, Length=386, Percent_Identity=25.3886010362694, Blast_Score=117, Evalue=6e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR013670 - InterPro: IPR007409 [H]
Pfam domain/function: PF08463 EcoEI_R_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 109184; Mature: 109184
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLVLNNPEYNVKVLTTIQNELQKCEEFYIAVAFITESGITPLLQNLKELEQKNVKGKIL CEEEECCCCCCEEEEHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEE TTDYLAFSQPKALKRLNNLSNIEVRLYQVTDSYGFHPKGYIFKNTNYYNILIGSSNLTQK EEEHHHCCCCHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEECCCEEEEEEECCCCCCE ALTVNMEWNILTEYRENNEIVSDLSNSFIKYWNKSRNIDECIDEYEAYYNESNKHTYYPK EEEEEEEEEEEEEHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEECCCH KEIKDEFKPNSMQKQFIDNFLETIKTHTRGLLISATGTGKTYASAFALREINPRKILFLV HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEE HREQIAKQAMNSYKNVFKNRSYGLFTGTSKDYDADFIFSTIQTMSQEKYYSRYEKDEFDI EHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCE IVIDEVHHAGAPSYQEIMNYFTPKFYLGMTGSPDRSDEFDIYDLFDHNIIYEIRLKKALE EEEECCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCCEEEEEEEHHHHH ENILCDFHYFGINNPVDDNYLSEGYVDEIIENIEYYGFNGNRVKGLVFCNNVDNAKVLSD CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCEEECCCCCEEEEEEEECCCCCHHHHHH MFNMRGYNTISLSGNNTQDEREDAINRLVSDDIDNTLDYIFTVDIFNEGVDIIEINQIVM HHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHEEEEEECCCCCCEEEECEEEE LRPTQSSIVFIQQLGRGLRKHSNKEYVVVLDFIGNFDTNYMIPIALSDDRTYNKDTIRKF EECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHH MFDSNNLLPGASTISFDRISKEKIYHSIDNATINSISFLRNKYMNFKKKIGRIPLLIDFY HCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC NYDELDAMFIIKYMKEKLPSKKKAYPVLLSKLDKSFNNSLCEDEILYLEFLSLKIANGKR CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHEEEEEEEEECCCCC PHELIILRELIENRQISIYDVNNILENNYSLTDNALSIKSAIKILSVSYYKKMERTKYSR CHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE VKLLEVNNNILFIHENFRKLLENEIFKKFIYDIIDIGFKEYDLKYRNPSCTPFKLYEKYS EEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHC REDVSRLLNWPENESTTIFGYRTVADFKGNLSCPMFVTYNKNEDISQSIQYEDKFIDNTT HHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCE MYWMSKHNKTLESEDVKTIINYRDNNLKMYLFIKKSDSEDEQYFYYVGEVIPKEYIPTCD EEEEECCCCCCCHHHHHHHEEECCCCEEEEEEEECCCCCCCEEEEEEHHHCCHHHCCCHH KLGNDIVRFTLKLNTSLRDDIYEYLVN HCCCCEEEEEEEECCCHHHHHHHHHCC >Mature Secondary Structure MKLVLNNPEYNVKVLTTIQNELQKCEEFYIAVAFITESGITPLLQNLKELEQKNVKGKIL CEEEECCCCCCEEEEHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEE TTDYLAFSQPKALKRLNNLSNIEVRLYQVTDSYGFHPKGYIFKNTNYYNILIGSSNLTQK EEEHHHCCCCHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEECCCEEEEEEECCCCCCE ALTVNMEWNILTEYRENNEIVSDLSNSFIKYWNKSRNIDECIDEYEAYYNESNKHTYYPK EEEEEEEEEEEEEHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEECCCH KEIKDEFKPNSMQKQFIDNFLETIKTHTRGLLISATGTGKTYASAFALREINPRKILFLV HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEE HREQIAKQAMNSYKNVFKNRSYGLFTGTSKDYDADFIFSTIQTMSQEKYYSRYEKDEFDI EHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCE IVIDEVHHAGAPSYQEIMNYFTPKFYLGMTGSPDRSDEFDIYDLFDHNIIYEIRLKKALE EEEECCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCCEEEEEEEHHHHH ENILCDFHYFGINNPVDDNYLSEGYVDEIIENIEYYGFNGNRVKGLVFCNNVDNAKVLSD CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCEEECCCCCEEEEEEEECCCCCHHHHHH MFNMRGYNTISLSGNNTQDEREDAINRLVSDDIDNTLDYIFTVDIFNEGVDIIEINQIVM HHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHEEEEEECCCCCCEEEECEEEE LRPTQSSIVFIQQLGRGLRKHSNKEYVVVLDFIGNFDTNYMIPIALSDDRTYNKDTIRKF EECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHH MFDSNNLLPGASTISFDRISKEKIYHSIDNATINSISFLRNKYMNFKKKIGRIPLLIDFY HCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC NYDELDAMFIIKYMKEKLPSKKKAYPVLLSKLDKSFNNSLCEDEILYLEFLSLKIANGKR CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHEEEEEEEEECCCCC PHELIILRELIENRQISIYDVNNILENNYSLTDNALSIKSAIKILSVSYYKKMERTKYSR CHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE VKLLEVNNNILFIHENFRKLLENEIFKKFIYDIIDIGFKEYDLKYRNPSCTPFKLYEKYS EEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHC REDVSRLLNWPENESTTIFGYRTVADFKGNLSCPMFVTYNKNEDISQSIQYEDKFIDNTT HHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCE MYWMSKHNKTLESEDVKTIINYRDNNLKMYLFIKKSDSEDEQYFYYVGEVIPKEYIPTCD EEEEECCCCCCCHHHHHHHEEECCCCEEEEEEEECCCCCCCEEEEEEHHHCCHHHCCCHH KLGNDIVRFTLKLNTSLRDDIYEYLVN HCCCCEEEEEEEECCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]