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The map label for this gene is ytcC [H]

Identifier: 84488874

GI number: 84488874

Start: 47838

End: 49079

Strand: Direct

Name: ytcC [H]

Synonym: Msp_0044

Alternate gene names: 84488874

Gene position: 47838-49079 (Clockwise)

Preceding gene: 84488873

Following gene: 84488875

Centisome position: 2.71

GC content: 28.5

Gene sequence:

>1242_bases
ATGACTAAACAATTAAAGATAGCAGTTTTTCATAACCTGCCTTCTGGAGGAGCTAAGAGATCATTATATACATATATTGA
TTATTTAACAAAGCATGGACATATTGTAGATGTGTTCATACCAGAAACAGCTAATGAGGAATATTTACCATTAGAACCAA
TAGCTAATAATGTAATTAAATACGATGTAAAACCTAGTTTTTTCAGAGAGAAAATTTATTCAATATTCAGTTATGTGCCA
GCTATTATTAAGAAAGTATCTCTAAACAACGTTTTCAATACTGAAAAAAAAATAGCTGTAGATTTAAATTCATCAGATTA
TGATATAATCTACTGTGAACAGGATCAATTTACAATGACTCCCATAATCTTTAAATATTTAACAAAACCTAATCTATACT
ACTGTCAACAGCCAATTAGAACTGATAAAATACTAAAAATAGTAAATAATCAAAAGAAAAAGTCAAGCATATTTAATAAT
AGATTAATTAAGCCATTTGCACAATATTTTGTTAATTATGTTGAAACAAGGGATTATGAAAGGGATCTTGAATTTGCACA
GTACTCAACAAATCTTCTTGCAAACTCATATTTTAGTCATGAAAATATTCTAAGACAATATGGTAAAAATGCATATGTGT
CATATATTGGTGTGGATACTAGTATGTTTAAACCATATAATCTTGAAAGAGAAAACTTCGTACTATCTGTTGGTACATGT
ATACCACCAAAGGGTTATGATTTTCTAATTAAAGCAATAGCACATATACCAGAAAATCAAAGACCTAAACTAGTTCTAGT
AGGTAACAGTAGTGATGAAGGATGGGTAAACTATCTTAAAACATTAGCCAATAGGAAGAATGTAAAACTAGATATTCATT
CAATGATTTCAGATGTTGAATTAATTAAACTATATAATACAGCTAAATTAGTTGTATATGCACCATACTTAGAACCTTTT
GGATATGTTCCATTAGAAGCAATGGCTTGTGGAACACCTGTTGTTGGAGTTAAAGAGGGAGGAGTTAAAGAAACAGTACA
ACATAATAAAACAGGACTTTTAACTCAAAGAGATGAAAAATCATTTGCAAAGGCAATAATTACCCTATCAAATAACAAGG
AACTATGGAATAAATTTTCATACAATGGAATTAAAACCATACAATCCTATTGGACATTAGAACATGCAGGTAACAGATTA
TTAAATCATATATATAGAATTTTGGATAATCAAGATGATTAA

Upstream 100 bases:

>100_bases
ACTACATCTAGTTAATTTAAATAATATATAAAAAAACAAATATAAATATTAATTAGTAATTTTTTTAGAAGATTAATGAT
AGGGAATAAAAGGGGATAAA

Downstream 100 bases:

>100_bases
AATGACAAAACCATTAGTATCAATAATATTATTAAATTGGAATGGGTATGATGATACATTAGAAGCATTAGAATCATTAT
ATCAAATAAACTATCCTAAC

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MTKQLKIAVFHNLPSGGAKRSLYTYIDYLTKHGHIVDVFIPETANEEYLPLEPIANNVIKYDVKPSFFREKIYSIFSYVP
AIIKKVSLNNVFNTEKKIAVDLNSSDYDIIYCEQDQFTMTPIIFKYLTKPNLYYCQQPIRTDKILKIVNNQKKKSSIFNN
RLIKPFAQYFVNYVETRDYERDLEFAQYSTNLLANSYFSHENILRQYGKNAYVSYIGVDTSMFKPYNLERENFVLSVGTC
IPPKGYDFLIKAIAHIPENQRPKLVLVGNSSDEGWVNYLKTLANRKNVKLDIHSMISDVELIKLYNTAKLVVYAPYLEPF
GYVPLEAMACGTPVVGVKEGGVKETVQHNKTGLLTQRDEKSFAKAIITLSNNKELWNKFSYNGIKTIQSYWTLEHAGNRL
LNHIYRILDNQDD

Sequences:

>Translated_413_residues
MTKQLKIAVFHNLPSGGAKRSLYTYIDYLTKHGHIVDVFIPETANEEYLPLEPIANNVIKYDVKPSFFREKIYSIFSYVP
AIIKKVSLNNVFNTEKKIAVDLNSSDYDIIYCEQDQFTMTPIIFKYLTKPNLYYCQQPIRTDKILKIVNNQKKKSSIFNN
RLIKPFAQYFVNYVETRDYERDLEFAQYSTNLLANSYFSHENILRQYGKNAYVSYIGVDTSMFKPYNLERENFVLSVGTC
IPPKGYDFLIKAIAHIPENQRPKLVLVGNSSDEGWVNYLKTLANRKNVKLDIHSMISDVELIKLYNTAKLVVYAPYLEPF
GYVPLEAMACGTPVVGVKEGGVKETVQHNKTGLLTQRDEKSFAKAIITLSNNKELWNKFSYNGIKTIQSYWTLEHAGNRL
LNHIYRILDNQDD
>Mature_412_residues
TKQLKIAVFHNLPSGGAKRSLYTYIDYLTKHGHIVDVFIPETANEEYLPLEPIANNVIKYDVKPSFFREKIYSIFSYVPA
IIKKVSLNNVFNTEKKIAVDLNSSDYDIIYCEQDQFTMTPIIFKYLTKPNLYYCQQPIRTDKILKIVNNQKKKSSIFNNR
LIKPFAQYFVNYVETRDYERDLEFAQYSTNLLANSYFSHENILRQYGKNAYVSYIGVDTSMFKPYNLERENFVLSVGTCI
PPKGYDFLIKAIAHIPENQRPKLVLVGNSSDEGWVNYLKTLANRKNVKLDIHSMISDVELIKLYNTAKLVVYAPYLEPFG
YVPLEAMACGTPVVGVKEGGVKETVQHNKTGLLTQRDEKSFAKAIITLSNNKELWNKFSYNGIKTIQSYWTLEHAGNRLL
NHIYRILDNQDD

Specific function: Involved In The Addition Of The First Glucose Residue To The Lipopolysaccharide Core. [C]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Caenorhabditis elegans, GI32564184, Length=125, Percent_Identity=34.4, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21357469, Length=127, Percent_Identity=36.2204724409449, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 47747; Mature: 47616

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKQLKIAVFHNLPSGGAKRSLYTYIDYLTKHGHIVDVFIPETANEEYLPLEPIANNVIK
CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCEEE
YDVKPSFFREKIYSIFSYVPAIIKKVSLNNVFNTEKKIAVDLNSSDYDIIYCEQDQFTMT
ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCHH
PIIFKYLTKPNLYYCQQPIRTDKILKIVNNQKKKSSIFNNRLIKPFAQYFVNYVETRDYE
HHHHHHHCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RDLEFAQYSTNLLANSYFSHENILRQYGKNAYVSYIGVDTSMFKPYNLERENFVLSVGTC
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCCCEEEEECCC
IPPKGYDFLIKAIAHIPENQRPKLVLVGNSSDEGWVNYLKTLANRKNVKLDIHSMISDVE
CCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEHHHHHCCHH
LIKLYNTAKLVVYAPYLEPFGYVPLEAMACGTPVVGVKEGGVKETVQHNKTGLLTQRDEK
HEEEECCEEEEEEECCCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHCCCCCCCCCCHHH
SFAKAIITLSNNKELWNKFSYNGIKTIQSYWTLEHAGNRLLNHIYRILDNQDD
HHEEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TKQLKIAVFHNLPSGGAKRSLYTYIDYLTKHGHIVDVFIPETANEEYLPLEPIANNVIK
CCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCEEE
YDVKPSFFREKIYSIFSYVPAIIKKVSLNNVFNTEKKIAVDLNSSDYDIIYCEQDQFTMT
ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCHH
PIIFKYLTKPNLYYCQQPIRTDKILKIVNNQKKKSSIFNNRLIKPFAQYFVNYVETRDYE
HHHHHHHCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RDLEFAQYSTNLLANSYFSHENILRQYGKNAYVSYIGVDTSMFKPYNLERENFVLSVGTC
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCCCEEEEECCC
IPPKGYDFLIKAIAHIPENQRPKLVLVGNSSDEGWVNYLKTLANRKNVKLDIHSMISDVE
CCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEHHHHHCCHH
LIKLYNTAKLVVYAPYLEPFGYVPLEAMACGTPVVGVKEGGVKETVQHNKTGLLTQRDEK
HEEEECCEEEEEEECCCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHCCCCCCCCCCHHH
SFAKAIITLSNNKELWNKFSYNGIKTIQSYWTLEHAGNRLLNHIYRILDNQDD
HHEEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]