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The map label for this gene is lptA [H]

Identifier: 83721552

GI number: 83721552

Start: 540694

End: 541359

Strand: Reverse

Name: lptA [H]

Synonym: BTH_I0488

Alternate gene names: 83721552

Gene position: 541359-540694 (Counterclockwise)

Preceding gene: 83721373

Following gene: 83720803

Centisome position: 14.21

GC content: 69.37

Gene sequence:

>666_bases
ATGAACGAATCGTTCCCCTGTTTATTTCCGAGCGGCGCACGCCGCGCCGTGCGCGCGATGGTCGCGGCGGCGCTCGTCGC
GGCGCCGCTCGCGGGCGTCGCGCCCGCAGCTCACGCCGAAAAGGCCGATCGCGACAAGCCGATCAACGTCGAGGCGGACA
ACCTGACCTATGACGACCTGAAGCAGGTCACGGTCGCGACGGGCAACGTCGTCATCACGAAGGGCACGATCCTGATCAAG
GGCGATCGCGTCGAAGTGCGCCAGGACCCGCAGGGCTACCAGTACGCGACGGCGACGGCCTCCGGCAAGAAACACGCGTC
GTTCCGCCAGAAGCGCGAAGGCCTCGACGAATACATCGACGGCGATGCCGAGCGCATCGACTACGACGGCAAGCAGGATC
TGACCACCCTCACGACGAACGCGACGGTGCGCCGCCTGCAGGGCCAGTCGACCGTGGCCGACACGGTCCACGGCAGCGTG
ATCACGTACGACGGCCAGCGCGACTTCTACACGGCGCGCGGCGGCAAGGACGTCGCCGGCCCGGGCAATCCGGGCGGCCG
CGTGCGCGCGATGCTCACGCCGAAGAACGGCGGCCCGGCGCCGCTGTCCGGCAGCCCCGCGCAGCTCGCGCCGTCGAACA
ACATTCAGGGAGCCCCGAACCCGTGA

Upstream 100 bases:

>100_bases
GGTCATCGAACTTTACGGCAACGTGCGCGGCACGATCGCCGCTTCCGACACGTCCGGCGGCGCTGCTGGCCAACCCAAGT
AACTCACCACGCGGGACTGC

Downstream 100 bases:

>100_bases
ACGCGCTCCCCAATCGCCAACCGGCCGGCACGTCGAGCTCGCTCGTCGTGCGCAACCTGAAGAAGCGCTATGGCTCGCGC
ACCGTCGTCAAGGACGTGTC

Product: OstA-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MNESFPCLFPSGARRAVRAMVAAALVAAPLAGVAPAAHAEKADRDKPINVEADNLTYDDLKQVTVATGNVVITKGTILIK
GDRVEVRQDPQGYQYATATASGKKHASFRQKREGLDEYIDGDAERIDYDGKQDLTTLTTNATVRRLQGQSTVADTVHGSV
ITYDGQRDFYTARGGKDVAGPGNPGGRVRAMLTPKNGGPAPLSGSPAQLAPSNNIQGAPNP

Sequences:

>Translated_221_residues
MNESFPCLFPSGARRAVRAMVAAALVAAPLAGVAPAAHAEKADRDKPINVEADNLTYDDLKQVTVATGNVVITKGTILIK
GDRVEVRQDPQGYQYATATASGKKHASFRQKREGLDEYIDGDAERIDYDGKQDLTTLTTNATVRRLQGQSTVADTVHGSV
ITYDGQRDFYTARGGKDVAGPGNPGGRVRAMLTPKNGGPAPLSGSPAQLAPSNNIQGAPNP
>Mature_221_residues
MNESFPCLFPSGARRAVRAMVAAALVAAPLAGVAPAAHAEKADRDKPINVEADNLTYDDLKQVTVATGNVVITKGTILIK
GDRVEVRQDPQGYQYATATASGKKHASFRQKREGLDEYIDGDAERIDYDGKQDLTTLTTNATVRRLQGQSTVADTVHGSV
ITYDGQRDFYTARGGKDVAGPGNPGGRVRAMLTPKNGGPAPLSGSPAQLAPSNNIQGAPNP

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane. May act as a chaperone that facilitates LPS transfer across the aquaeous environment of the periplasm. Interacts specifically with the lipid A domain

COG id: COG1934

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptA family [H]

Homologues:

Organism=Escherichia coli, GI1789592, Length=181, Percent_Identity=29.2817679558011, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014340
- InterPro:   IPR005653 [H]

Pfam domain/function: PF03968 OstA [H]

EC number: NA

Molecular weight: Translated: 23286; Mature: 23286

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNESFPCLFPSGARRAVRAMVAAALVAAPLAGVAPAAHAEKADRDKPINVEADNLTYDDL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCCHHHH
KQVTVATGNVVITKGTILIKGDRVEVRQDPQGYQYATATASGKKHASFRQKREGLDEYID
HEEEEECCCEEEEECEEEEECCEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHC
GDAERIDYDGKQDLTTLTTNATVRRLQGQSTVADTVHGSVITYDGQRDFYTARGGKDVAG
CCHHEECCCCCCCCEEEECCHHHHHHCCCCHHHHHCCCCEEEECCCCCEEEECCCCCCCC
PGNPGGRVRAMLTPKNGGPAPLSGSPAQLAPSNNIQGAPNP
CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNESFPCLFPSGARRAVRAMVAAALVAAPLAGVAPAAHAEKADRDKPINVEADNLTYDDL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEECCCCHHHH
KQVTVATGNVVITKGTILIKGDRVEVRQDPQGYQYATATASGKKHASFRQKREGLDEYID
HEEEEECCCEEEEECEEEEECCEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHC
GDAERIDYDGKQDLTTLTTNATVRRLQGQSTVADTVHGSVITYDGQRDFYTARGGKDVAG
CCHHEECCCCCCCCEEEECCHHHHHHCCCCHHHHHCCCCEEEECCCCCEEEECCCCCCCC
PGNPGGRVRAMLTPKNGGPAPLSGSPAQLAPSNNIQGAPNP
CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]