| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is 83721489
Identifier: 83721489
GI number: 83721489
Start: 2266852
End: 2268153
Strand: Direct
Name: 83721489
Synonym: BTH_I2003
Alternate gene names: NA
Gene position: 2266852-2268153 (Clockwise)
Preceding gene: 83721632
Following gene: 83720749
Centisome position: 59.51
GC content: 74.12
Gene sequence:
>1302_bases ATGGCATTGGCTGAAGCGGCGCTCGAAGAGCTGGGACTCGCGCCCATGTGGGTGCGGCGCGGCGCGGCGCGCGCCGGCGG CGTGAACGAGGATGCGACGGGCGCGGCGCGGGAGACCGACGTCGCGGCGGTTGCGCTAGGGGCGCAACCGGTGTCGGATG CGGCGCGCCGGATGTCGCATGACGGCGCGCAAGGCAGGGGGCGCGGTGGTGCGGGGGCGCCGGCCGCGTCGACGTCTGCG GACGACGCATCGGCCGACGGCGCCGCGCACGCGGAATCGATCGGGACCGCCGCGCTCGCCGACGGTCGCGCGGCGCCTGC GCGGCAGGCTGCCGACGCGCGCGGCCAAGCGCGGCAAGCGGCGGCCGAATCCGGCATGCGGGCGGCGGATGCGCCTGCGG CGTTCGAGTCGGGCGCGCGAAATTCGCGGGACTCGACGATCGCGCGCGCGGCTTCGACGGTCGAGCCGGTCGCCGCGGGC GGCGCGCGTCGCGTGCCGCCGCACGCCGCCGTCGCCGCCGCTGCCGCGGAATCGGCGGCCTTCGAGCAGGATGCGGCGCA GCCGGCACGTTCGTCGGCGGCGTCCGCGCCGGCCGCACGAACCGGGGGCGACGCCGGCGCGGCGGCAGCCGACGAAGACA TGTCGTGGTTCGATCTCGAGCCGGGGGTCGAGCCCGCGCCGCCTGACGTCGCCGCGGAGCCCGCCGCTCGCGCGCCGTCC GTCGCCGAGCTCGGCTGGGACGAATTGCGCGCGCGCGTGGCCGACTGCGAGCGCTGCCGTCTTTGCGAGAAGCGCACGAA CACGGTGTTCGGCGTCGGCGACGAGCGCGCGGACTGGATGCTCGTCGGCGAGGCGCCGGGCGAGAACGAGGACAAGCAGG GCGAGCCGTTCGTCGGCCAGGCGGGCAAGCTGCTCGACAACATGCTGCGCGCGCTCGCGCTCAAGCGCGGCGAGAACGTC TATATCGCGAACGTGATCAAGTGCCGGCCGCCCGGCAACCGCAATCCCGAGCCCGACGAGGTCGCGCGCTGCGAGCCGTA TCTGCAGCGACAAGTCGCGCTCGTGAAGCCGAAGCTGATCGTCGCGCTCGGCCGCTTCGCCGCGCAGACGCTTCTCAAGA CGGACGGAAGCATCGCCTCGATGCGCGGGCGCGTGCACGAGTACGAAGGCGTGCCCGTGATCGTCACGTACCATCCGGCG TATCTGCTGCGCAGCCTGCAGGACAAGGCGAAAGCCTGGTCCGATCTGTGCCTCGCGAACGATACCTACCGGAGTGCCGC GCCGGCCGCCGATCCGCAATGA
Upstream 100 bases:
>100_bases GTGTCGGTTGGCCGGCGCAGGAACTACTATCCGGCGAAGCACCGGAGCCGGGAGGACGCAATCGTGATGCGTCTCGCATT GACGAAGGAGGGAGGCGCGC
Downstream 100 bases:
>100_bases GTGCCGCGGCGTCGCCCGTGCCGCTGAGCGCGTTGCGCGACGCGGCCGTGCGCGACCTCGCGTGGCTGCTGTCGAGTGCG AGCCTGCTCGCGCCGTCGGC
Product: phage SPO1 DNA polymerase domain-containing protein
Products: NA
Alternate protein names: Uracil-DNA Glycosylase; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase; DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily Protein; DNA-Directed DNA Polymerase; DNA Polymerase-Related Protein Bacteriophage-Type; DNA Glycosylase; Uracil-DNA Glycosylase Family 4 Protein; Phage Spo1 DNA Polymerase-Related Protein; DNA Polymerase-Related Protein; Bacteriophage-Related DNA Polymerase; N-Terminus Of Bacteriophage-Type DNA Polymerase; Phage SPO1 DNA Polymerase Domain-Containing Protein; DNA Polymerase Domain-Containing Protein; Phage Related DNA Polymerase; Uracil-DNA Glycosylase C-Terminal; Phage SpO1 DNA Polymerase-Related Protein; Arginine Biosynthesis Bifunctional Protein ArgJ; Bacteriophage-Type DNA Polymerase; Uracil DNA Glycosylase; Phage DNA Polymerase-Related Protein; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil-DNA Glycosylase Phage-Related Protein; Uracil-DNA Glycosylase Superfamily Protein; Phage Shock Protein E; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage DNA Polymerase; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase C-Terminal Domain Protein; Uracil-DNA Glycosylase-Like Protein; Uracil-DNA Glycosylase-Related Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein
Number of amino acids: Translated: 433; Mature: 432
Protein sequence:
>433_residues MALAEAALEELGLAPMWVRRGAARAGGVNEDATGAARETDVAAVALGAQPVSDAARRMSHDGAQGRGRGGAGAPAASTSA DDASADGAAHAESIGTAALADGRAAPARQAADARGQARQAAAESGMRAADAPAAFESGARNSRDSTIARAASTVEPVAAG GARRVPPHAAVAAAAAESAAFEQDAAQPARSSAASAPAARTGGDAGAAAADEDMSWFDLEPGVEPAPPDVAAEPAARAPS VAELGWDELRARVADCERCRLCEKRTNTVFGVGDERADWMLVGEAPGENEDKQGEPFVGQAGKLLDNMLRALALKRGENV YIANVIKCRPPGNRNPEPDEVARCEPYLQRQVALVKPKLIVALGRFAAQTLLKTDGSIASMRGRVHEYEGVPVIVTYHPA YLLRSLQDKAKAWSDLCLANDTYRSAAPAADPQ
Sequences:
>Translated_433_residues MALAEAALEELGLAPMWVRRGAARAGGVNEDATGAARETDVAAVALGAQPVSDAARRMSHDGAQGRGRGGAGAPAASTSA DDASADGAAHAESIGTAALADGRAAPARQAADARGQARQAAAESGMRAADAPAAFESGARNSRDSTIARAASTVEPVAAG GARRVPPHAAVAAAAAESAAFEQDAAQPARSSAASAPAARTGGDAGAAAADEDMSWFDLEPGVEPAPPDVAAEPAARAPS VAELGWDELRARVADCERCRLCEKRTNTVFGVGDERADWMLVGEAPGENEDKQGEPFVGQAGKLLDNMLRALALKRGENV YIANVIKCRPPGNRNPEPDEVARCEPYLQRQVALVKPKLIVALGRFAAQTLLKTDGSIASMRGRVHEYEGVPVIVTYHPA YLLRSLQDKAKAWSDLCLANDTYRSAAPAADPQ >Mature_432_residues ALAEAALEELGLAPMWVRRGAARAGGVNEDATGAARETDVAAVALGAQPVSDAARRMSHDGAQGRGRGGAGAPAASTSAD DASADGAAHAESIGTAALADGRAAPARQAADARGQARQAAAESGMRAADAPAAFESGARNSRDSTIARAASTVEPVAAGG ARRVPPHAAVAAAAAESAAFEQDAAQPARSSAASAPAARTGGDAGAAAADEDMSWFDLEPGVEPAPPDVAAEPAARAPSV AELGWDELRARVADCERCRLCEKRTNTVFGVGDERADWMLVGEAPGENEDKQGEPFVGQAGKLLDNMLRALALKRGENVY IANVIKCRPPGNRNPEPDEVARCEPYLQRQVALVKPKLIVALGRFAAQTLLKTDGSIASMRGRVHEYEGVPVIVTYHPAY LLRSLQDKAKAWSDLCLANDTYRSAAPAADPQ
Specific function: Unknown
COG id: COG1573
COG function: function code L; Uracil-DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44562; Mature: 44431
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALAEAALEELGLAPMWVRRGAARAGGVNEDATGAARETDVAAVALGAQPVSDAARRMSH CCHHHHHHHHHCCCHHHHHHCCHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHC DGAQGRGRGGAGAPAASTSADDASADGAAHAESIGTAALADGRAAPARQAADARGQARQA CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHH AAESGMRAADAPAAFESGARNSRDSTIARAASTVEPVAAGGARRVPPHAAVAAAAAESAA HHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH FEQDAAQPARSSAASAPAARTGGDAGAAAADEDMSWFDLEPGVEPAPPDVAAEPAARAPS HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC VAELGWDELRARVADCERCRLCEKRTNTVFGVGDERADWMLVGEAPGENEDKQGEPFVGQ HHHCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCH AGKLLDNMLRALALKRGENVYIANVIKCRPPGNRNPEPDEVARCEPYLQRQVALVKPKLI HHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHH VALGRFAAQTLLKTDGSIASMRGRVHEYEGVPVIVTYHPAYLLRSLQDKAKAWSDLCLAN HHHHHHHHHHHHHCCCCHHHHHCCHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCC DTYRSAAPAADPQ CCHHCCCCCCCCC >Mature Secondary Structure ALAEAALEELGLAPMWVRRGAARAGGVNEDATGAARETDVAAVALGAQPVSDAARRMSH CHHHHHHHHHCCCHHHHHHCCHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHC DGAQGRGRGGAGAPAASTSADDASADGAAHAESIGTAALADGRAAPARQAADARGQARQA CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHH AAESGMRAADAPAAFESGARNSRDSTIARAASTVEPVAAGGARRVPPHAAVAAAAAESAA HHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH FEQDAAQPARSSAASAPAARTGGDAGAAAADEDMSWFDLEPGVEPAPPDVAAEPAARAPS HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC VAELGWDELRARVADCERCRLCEKRTNTVFGVGDERADWMLVGEAPGENEDKQGEPFVGQ HHHCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCH AGKLLDNMLRALALKRGENVYIANVIKCRPPGNRNPEPDEVARCEPYLQRQVALVKPKLI HHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHH VALGRFAAQTLLKTDGSIASMRGRVHEYEGVPVIVTYHPAYLLRSLQDKAKAWSDLCLAN HHHHHHHHHHHHHCCCCHHHHHCCHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCC DTYRSAAPAADPQ CCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA