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The map label for this gene is stc [H]

Identifier: 83721487

GI number: 83721487

Start: 2890914

End: 2892221

Strand: Reverse

Name: stc [H]

Synonym: BTH_I2534

Alternate gene names: 83721487

Gene position: 2892221-2890914 (Counterclockwise)

Preceding gene: 83720829

Following gene: 83720808

Centisome position: 75.93

GC content: 66.9

Gene sequence:

>1308_bases
ATGTCGAGCTTCGACGTCGAAGTGATCCGCGCGGACAACGAGGAACTGTCGGCCGAACGAACCGCGATGCGGCCGTCGCT
CGCGATCATCAGCGTATCGATGATCGAAAGCGGCGCGGCGTTCCTGCGCACGTGGCAGGCGGACATCGGCATGCCGGTGG
TCTGGGTCGGTGCCGCGCGCGATCACGATCCGTCGCTGTATCCGCCCGAGTATTCGCACATCCTGCCGCTCGATTTCACG
TGCGCGGAGCTGCGCGGCATGATCTCGAAGCTCGCGGTGCAGTTGCGCGCGCACGCGGCGAAGACGCTCGAGCCGAGCAC
GCTCGTCGCGCATTCGGACTGCATGCAGGCGCTGCTGCTGGAGGTCGACACGTTCGCCGACTGCGATACGAACGTGCTGC
TGCACGGCGAGACGGGCGTCGGCAAGGAGCGGATCGCGCAGTTGCTGCACGAGAAGCACTCGCGCTACAGCATGGGCGAA
TTCGTGCCCGTGAACTGCGGCGCGATTCCGGACGGCCTGTTCGAGTCGCTGTTCTTCGGGCATGCGAAGGGCTCGTTTAC
GGGCGCGGTCGGCACGCACAAGGGCTACTTCGAGCAGGCGGCGGGCGGCACGCTCTTTCTCGACGAAGTGGGCGATCTGC
CGCTCTACCAGCAGGTGAAACTGCTGCGCGTGCTCGAGGACGGCGCGGTGCTGCGCATCGGCGCGACCGCGCCCGTCAAG
GTGGATTTCCGGCTCGTCGCGGCGAGCAACAAGAAACTGCCGCAGCTCGTCAAGGACGGCTTGTTCCGGGCGGACCTATA
CTACCGGCTTGCGGTGATCGAGCTGAGCATTCCGTCGCTCGAGGAGCGCGGGCCCGTCGACAAGATCGCGCTGTTCAAGT
CGTTCGTCGCGTCGATCGTCGGCGAGGACCGGCTCGCCGCGCTGCCGGAGCTGCCATACTGGCTCGCCGAAGCGGTGGCC
GATTCGTACTTCCCGGGCAACGTGCGCGAGCTGCGCAACCTGGCCGAGCGCGTCGGCGTGACGGTGCGGCAGACGGGCGG
CTGGGACACGGCGCGGCTGCAGCGGCTCGTCGCGCATGCGCGCAGCGCCGCGCAGCCGGTGCCGGCGGAGAGCGCGCCGG
ATGTGTTCGTGGATCGCAGCAAGTGGGACATGGCCGAGCGCAACCGCGTGATCGCCGCGCTTGACGCAAACGGTTGGCGT
CGGCAGGATACCGCGCAGCATCTCGGAATCAGCCGCAAGGTGCTGTGGGAAAAGATGCGCAAATACCAGATTTTCGACGA
GGAGCCTGAGGCACGGGAAAGCGAGTGA

Upstream 100 bases:

>100_bases
AGATTCACGCATAACGATGAGAAACACGAACGCAATCGAAGGGCTCGATCTGTACGTCTGGGAGGGCAAGGCCGATATCG
TCGACCGGGTCGCGCGCTGC

Downstream 100 bases:

>100_bases
AAGAGGGCTGCGATGCAGCCGACGAACATGCATTCGAAAAACTACAACACTTCGAAGCAGGAATAAACAGAATGAGCCAC
ATACGGGGAATGGGGCGCGT

Product: sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MSSFDVEVIRADNEELSAERTAMRPSLAIISVSMIESGAAFLRTWQADIGMPVVWVGAARDHDPSLYPPEYSHILPLDFT
CAELRGMISKLAVQLRAHAAKTLEPSTLVAHSDCMQALLLEVDTFADCDTNVLLHGETGVGKERIAQLLHEKHSRYSMGE
FVPVNCGAIPDGLFESLFFGHAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGDLPLYQQVKLLRVLEDGAVLRIGATAPVK
VDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGPVDKIALFKSFVASIVGEDRLAALPELPYWLAEAVA
DSYFPGNVRELRNLAERVGVTVRQTGGWDTARLQRLVAHARSAAQPVPAESAPDVFVDRSKWDMAERNRVIAALDANGWR
RQDTAQHLGISRKVLWEKMRKYQIFDEEPEARESE

Sequences:

>Translated_435_residues
MSSFDVEVIRADNEELSAERTAMRPSLAIISVSMIESGAAFLRTWQADIGMPVVWVGAARDHDPSLYPPEYSHILPLDFT
CAELRGMISKLAVQLRAHAAKTLEPSTLVAHSDCMQALLLEVDTFADCDTNVLLHGETGVGKERIAQLLHEKHSRYSMGE
FVPVNCGAIPDGLFESLFFGHAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGDLPLYQQVKLLRVLEDGAVLRIGATAPVK
VDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGPVDKIALFKSFVASIVGEDRLAALPELPYWLAEAVA
DSYFPGNVRELRNLAERVGVTVRQTGGWDTARLQRLVAHARSAAQPVPAESAPDVFVDRSKWDMAERNRVIAALDANGWR
RQDTAQHLGISRKVLWEKMRKYQIFDEEPEARESE
>Mature_434_residues
SSFDVEVIRADNEELSAERTAMRPSLAIISVSMIESGAAFLRTWQADIGMPVVWVGAARDHDPSLYPPEYSHILPLDFTC
AELRGMISKLAVQLRAHAAKTLEPSTLVAHSDCMQALLLEVDTFADCDTNVLLHGETGVGKERIAQLLHEKHSRYSMGEF
VPVNCGAIPDGLFESLFFGHAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGDLPLYQQVKLLRVLEDGAVLRIGATAPVKV
DFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGPVDKIALFKSFVASIVGEDRLAALPELPYWLAEAVAD
SYFPGNVRELRNLAERVGVTVRQTGGWDTARLQRLVAHARSAAQPVPAESAPDVFVDRSKWDMAERNRVIAALDANGWRR
QDTAQHLGISRKVLWEKMRKYQIFDEEPEARESE

Specific function: Required For Induction Of Expression Of The Hydrogenase- 4 Structural Genes. [C]

COG id: COG1221

COG function: function code KT; Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87082117, Length=342, Percent_Identity=37.719298245614, Blast_Score=194, Evalue=9e-51,
Organism=Escherichia coli, GI1790437, Length=354, Percent_Identity=35.5932203389831, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1788550, Length=322, Percent_Identity=36.3354037267081, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1790299, Length=404, Percent_Identity=33.6633663366337, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI1789087, Length=237, Percent_Identity=42.6160337552743, Blast_Score=178, Evalue=5e-46,
Organism=Escherichia coli, GI1789233, Length=324, Percent_Identity=33.9506172839506, Blast_Score=177, Evalue=2e-45,
Organism=Escherichia coli, GI87081872, Length=325, Percent_Identity=34.7692307692308, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1788905, Length=230, Percent_Identity=40.4347826086956, Blast_Score=176, Evalue=4e-45,
Organism=Escherichia coli, GI87082152, Length=254, Percent_Identity=39.7637795275591, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1786524, Length=334, Percent_Identity=35.9281437125749, Blast_Score=170, Evalue=2e-43,
Organism=Escherichia coli, GI1787583, Length=350, Percent_Identity=32.8571428571429, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1789828, Length=205, Percent_Identity=36.5853658536585, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87081858, Length=301, Percent_Identity=28.5714285714286, Blast_Score=102, Evalue=7e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 48111; Mature: 47980

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSFDVEVIRADNEELSAERTAMRPSLAIISVSMIESGAAFLRTWQADIGMPVVWVGAAR
CCCCCEEEEECCCHHHHHHHHHCCCCHHEEEHHHHHCCHHHHHHHHHHCCCCEEEEECCC
DHDPSLYPPEYSHILPLDFTCAELRGMISKLAVQLRAHAAKTLEPSTLVAHSDCMQALLL
CCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
EVDTFADCDTNVLLHGETGVGKERIAQLLHEKHSRYSMGEFVPVNCGAIPDGLFESLFFG
HHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHC
HAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGDLPLYQQVKLLRVLEDGAVLRIGATAPVK
CCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEE
VDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGPVDKIALFKSFVASIV
EEEEEEECCCCCCHHHHHCCCHHHHHEEEEEEEEEECCCCHHCCCHHHHHHHHHHHHHHH
GEDRLAALPELPYWLAEAVADSYFPGNVRELRNLAERVGVTVRQTGGWDTARLQRLVAHA
CCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHH
RSAAQPVPAESAPDVFVDRSKWDMAERNRVIAALDANGWRRQDTAQHLGISRKVLWEKMR
HHHCCCCCCCCCCCCEEECCCCCHHHCCCEEEEECCCCCCCHHHHHHHCCHHHHHHHHHH
KYQIFDEEPEARESE
HCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSFDVEVIRADNEELSAERTAMRPSLAIISVSMIESGAAFLRTWQADIGMPVVWVGAAR
CCCCEEEEECCCHHHHHHHHHCCCCHHEEEHHHHHCCHHHHHHHHHHCCCCEEEEECCC
DHDPSLYPPEYSHILPLDFTCAELRGMISKLAVQLRAHAAKTLEPSTLVAHSDCMQALLL
CCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
EVDTFADCDTNVLLHGETGVGKERIAQLLHEKHSRYSMGEFVPVNCGAIPDGLFESLFFG
HHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHC
HAKGSFTGAVGTHKGYFEQAAGGTLFLDEVGDLPLYQQVKLLRVLEDGAVLRIGATAPVK
CCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEE
VDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGPVDKIALFKSFVASIV
EEEEEEECCCCCCHHHHHCCCHHHHHEEEEEEEEEECCCCHHCCCHHHHHHHHHHHHHHH
GEDRLAALPELPYWLAEAVADSYFPGNVRELRNLAERVGVTVRQTGGWDTARLQRLVAHA
CCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHH
RSAAQPVPAESAPDVFVDRSKWDMAERNRVIAALDANGWRRQDTAQHLGISRKVLWEKMR
HHHCCCCCCCCCCCCEEECCCCCHHHCCCEEEEECCCCCCCHHHHHHHCCHHHHHHHHHH
KYQIFDEEPEARESE
HCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA