| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
Click here to switch to the map view.
The map label for this gene is fdhA [H]
Identifier: 83721383
GI number: 83721383
Start: 2238432
End: 2240741
Strand: Direct
Name: fdhA [H]
Synonym: BTH_I1975
Alternate gene names: 83721383
Gene position: 2238432-2240741 (Clockwise)
Preceding gene: 83719494
Following gene: 83719435
Centisome position: 58.76
GC content: 67.97
Gene sequence:
>2310_bases ATGGCAGTCGAAAAAAACGCCTGTATCTTGTGTTCGCGCAATTGCGGCCTCGTCGTCGAAGTCGTCGACGGCAAGCTCGG AAAGATCCGCGGCGACGATGATCATCCGGTTTCGAAAGGCTATCTGTGCCAGAAGGCCGCGCGTCTCACGCACTACCAGC ATCACGGCGATCGCCTCACGCACCCGTTGCGCCGCGCGCCCGACGGCAGCTTCGTGCGCGTCACGTGGGACGAGGCGCTC GACGACATCGCGCAGCGCCTCGCCGTGCTGCGCGAGCGGCACGGCGGCGATGCGTTCGCGTTCGTCGGCGGCGGCGGGCA GGGCAATCACGTCGGCGGCGCGTACAGCCGGCAACTGCTCGCGGCGATGCGAAGCCGCTTCGCATACAACTCGCTCGGTC AGGAGAAGACCGGCGATTTCTGGCTCAACGGCCGGCTGTTCGGTCGTCAGGACTGCCATACGACAGAGGACGTCGAGCAT GCGGACTACGTGCTCGTCATCGGCGCGAATCCGTACCAGGCGCACGGCATTCCGAACGCGCGAGACACGCTGCGCGACCT GAAGAAGGACCCGGCGCGCACGCTCGTCGTCGTCGATCCGCGCCGCTCGGAAACGGCCAAGCTCGCCGATCTGCATCTGC AGGTGCGGCCCGGCGCGGACGCGTATCTGATGAGCGCGATGCTTGCGATCATGCTGCGCGACGGGTTGATCGACCGCGAG TTCATCGCGCGGCGCTGCACCGGCTTCGAGTTCGTCGAGCGCGCGCTGCGCGACGTGCCGATCGCCGAGTACGCGCGCCG TGCGGACGTGCCGCTCGAGGACGTCGAGCGCGTCGCGCACGGATTCGCGACCGCGCGCGCCGCGTGCCTGCGCATCGATC TCGGCATCCAGCACACGCTGCACACGACGCTCAACGGCTATCTCGAAAAGCTGCTGTTCCTGCTGACCGGCAACTTCGGC AAGCGCGGCGGCAACAACCTGCATTCGTTCCTGTTGCCCGTCATCGGCCATACCGACGAGCGCGCGAGCCGCAACGGCAA GCAGCTCAAGCGGACCGCGCATCACCGGATGTTTCCGATCGCGGGGATCTATCCGCCGAACATCCTGCCCGACGAGATCG AGCTCGCGGGCGAAAAACGCGTGCGCGCGGTGTTCGTCGACAGCGCGAACCCGGTCGTCACGTACGCCGATTCGAACGCA TACGAGCGCGCGTTCGGCAAGCTGGAGCTGCTCGTCGTGGTCGACGTCGCGATGACCGAGACCGCGCGCCTCGCGCATTA CGTGCTGCCCGCCGCGTCTCAGTTCGAGAAGTGGGAGGCGACGGGCTTCAACCTCGAGTTTCCGGCGAACGCGTTCCATC TGCGCCATCCGCTGCTGCCGCCGCTCGGCGAATCGCTGGCGGAGCCGGAGATCTACACGCGGCTGCTCGAAAAGATGGGC GAGCTGCCGCGCCGCTTTCCGCTTCTCGAGCGCATCGCGCGGTACGAGCCGCGCGCGTCGAAGCATCTCGCCTACATGGG CGCGCTCGGCGTCGCGCTCGCGGCGAACAAGAAGTGGCGGCGCTACGCGGCGTCGGTCGCCTATCGAACGCTCGGCCGCG CGCTGCCGGACGCGGCGGCGGCGGCCGCGCCGCTGCTGCCGCTCGCGATGATGTATGCGCACCGGCATCATGCGGCCGTG CGCCGAGCGGGATTTCGCGGCAGTCGAGCGATGCTCGGCACGGCGCTTTTTCGCGCGATTCTCGAACGGCGCTCGGGCAC GTTGACGAGCGTTCACGAGTTCGACGAAATGTGGCGCTTCATCCGCCACCCGGACGGCCGCGTGCATCTGCACATTCCGG AGATGATCGACGAGTTGCGCGCGCTCGAGACGCACACGCCGCCCGGCGCCGACTATCCGTTCGTGCTGATGGCGGGCGAG CGGCGCGCGTACAACGCGAACCAGATCTATCGCGACCCGGCATGGCGCAAGGTCGATCCGCACGGCTCGCTGCGGATTCA TCCGGACGACGCGGCGGCGCTCGGCGTCGCGGACGGCGGCAAGCTCGTGTGCGCGTCGGCGACGGGCAGCATCGAAGTCG TCGTCGAGCTCGACGACAGCGTGCGGCGCGGGATGGTCACGTTGCCGCACGGCTATGGGATGCGCTATAAGGGCGGGCCG CCGATCGGGCCCGAGCTCAATCGTCTGACGTCGGGCGCGCATTGCGATCCGCTGTCGCGCACGCCTTATCACAAGTACGT GCCGGTGCATTTGCGCGTCGTCGATACGCCGGTTGCCGGGCCCGCGACCGTCGAAGCCGAGCCGGCTTGA
Upstream 100 bases:
>100_bases GTTAATGGAAGTATAGAATAACGTCCGTTACGGTAACGATCGTTATCTATTCCTCACCATTTACCGATTCCGGCGGATGC GCTGGCGGATGGAGCATGCG
Downstream 100 bases:
>100_bases TTGCGCGCGCCGTCGCGCGCGGGCGCCTCGCCGGCGGACATCGCGTGGGGCGCGGTTGTCCGCGTGCCGGAGCGCGCGGC GCGGCCCGCTCGGAGCAGGC
Product: molybdopterin oxidoreductase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 769; Mature: 768
Protein sequence:
>769_residues MAVEKNACILCSRNCGLVVEVVDGKLGKIRGDDDHPVSKGYLCQKAARLTHYQHHGDRLTHPLRRAPDGSFVRVTWDEAL DDIAQRLAVLRERHGGDAFAFVGGGGQGNHVGGAYSRQLLAAMRSRFAYNSLGQEKTGDFWLNGRLFGRQDCHTTEDVEH ADYVLVIGANPYQAHGIPNARDTLRDLKKDPARTLVVVDPRRSETAKLADLHLQVRPGADAYLMSAMLAIMLRDGLIDRE FIARRCTGFEFVERALRDVPIAEYARRADVPLEDVERVAHGFATARAACLRIDLGIQHTLHTTLNGYLEKLLFLLTGNFG KRGGNNLHSFLLPVIGHTDERASRNGKQLKRTAHHRMFPIAGIYPPNILPDEIELAGEKRVRAVFVDSANPVVTYADSNA YERAFGKLELLVVVDVAMTETARLAHYVLPAASQFEKWEATGFNLEFPANAFHLRHPLLPPLGESLAEPEIYTRLLEKMG ELPRRFPLLERIARYEPRASKHLAYMGALGVALAANKKWRRYAASVAYRTLGRALPDAAAAAAPLLPLAMMYAHRHHAAV RRAGFRGSRAMLGTALFRAILERRSGTLTSVHEFDEMWRFIRHPDGRVHLHIPEMIDELRALETHTPPGADYPFVLMAGE RRAYNANQIYRDPAWRKVDPHGSLRIHPDDAAALGVADGGKLVCASATGSIEVVVELDDSVRRGMVTLPHGYGMRYKGGP PIGPELNRLTSGAHCDPLSRTPYHKYVPVHLRVVDTPVAGPATVEAEPA
Sequences:
>Translated_769_residues MAVEKNACILCSRNCGLVVEVVDGKLGKIRGDDDHPVSKGYLCQKAARLTHYQHHGDRLTHPLRRAPDGSFVRVTWDEAL DDIAQRLAVLRERHGGDAFAFVGGGGQGNHVGGAYSRQLLAAMRSRFAYNSLGQEKTGDFWLNGRLFGRQDCHTTEDVEH ADYVLVIGANPYQAHGIPNARDTLRDLKKDPARTLVVVDPRRSETAKLADLHLQVRPGADAYLMSAMLAIMLRDGLIDRE FIARRCTGFEFVERALRDVPIAEYARRADVPLEDVERVAHGFATARAACLRIDLGIQHTLHTTLNGYLEKLLFLLTGNFG KRGGNNLHSFLLPVIGHTDERASRNGKQLKRTAHHRMFPIAGIYPPNILPDEIELAGEKRVRAVFVDSANPVVTYADSNA YERAFGKLELLVVVDVAMTETARLAHYVLPAASQFEKWEATGFNLEFPANAFHLRHPLLPPLGESLAEPEIYTRLLEKMG ELPRRFPLLERIARYEPRASKHLAYMGALGVALAANKKWRRYAASVAYRTLGRALPDAAAAAAPLLPLAMMYAHRHHAAV RRAGFRGSRAMLGTALFRAILERRSGTLTSVHEFDEMWRFIRHPDGRVHLHIPEMIDELRALETHTPPGADYPFVLMAGE RRAYNANQIYRDPAWRKVDPHGSLRIHPDDAAALGVADGGKLVCASATGSIEVVVELDDSVRRGMVTLPHGYGMRYKGGP PIGPELNRLTSGAHCDPLSRTPYHKYVPVHLRVVDTPVAGPATVEAEPA >Mature_768_residues AVEKNACILCSRNCGLVVEVVDGKLGKIRGDDDHPVSKGYLCQKAARLTHYQHHGDRLTHPLRRAPDGSFVRVTWDEALD DIAQRLAVLRERHGGDAFAFVGGGGQGNHVGGAYSRQLLAAMRSRFAYNSLGQEKTGDFWLNGRLFGRQDCHTTEDVEHA DYVLVIGANPYQAHGIPNARDTLRDLKKDPARTLVVVDPRRSETAKLADLHLQVRPGADAYLMSAMLAIMLRDGLIDREF IARRCTGFEFVERALRDVPIAEYARRADVPLEDVERVAHGFATARAACLRIDLGIQHTLHTTLNGYLEKLLFLLTGNFGK RGGNNLHSFLLPVIGHTDERASRNGKQLKRTAHHRMFPIAGIYPPNILPDEIELAGEKRVRAVFVDSANPVVTYADSNAY ERAFGKLELLVVVDVAMTETARLAHYVLPAASQFEKWEATGFNLEFPANAFHLRHPLLPPLGESLAEPEIYTRLLEKMGE LPRRFPLLERIARYEPRASKHLAYMGALGVALAANKKWRRYAASVAYRTLGRALPDAAAAAAPLLPLAMMYAHRHHAAVR RAGFRGSRAMLGTALFRAILERRSGTLTSVHEFDEMWRFIRHPDGRVHLHIPEMIDELRALETHTPPGADYPFVLMAGER RAYNANQIYRDPAWRKVDPHGSLRIHPDDAAALGVADGGKLVCASATGSIEVVVELDDSVRRGMVTLPHGYGMRYKGGPP IGPELNRLTSGAHCDPLSRTPYHKYVPVHLRVVDTPVAGPATVEAEPA
Specific function: Catalyzes the oxidation of formate [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI3868721, Length=454, Percent_Identity=26.6519823788546, Blast_Score=145, Evalue=1e-35, Organism=Escherichia coli, GI1787870, Length=481, Percent_Identity=24.5322245322245, Blast_Score=114, Evalue=3e-26, Organism=Escherichia coli, GI171474008, Length=361, Percent_Identity=24.6537396121884, Blast_Score=102, Evalue=6e-23, Organism=Escherichia coli, GI3868719, Length=268, Percent_Identity=30.2238805970149, Blast_Score=102, Evalue=7e-23, Organism=Escherichia coli, GI87081797, Length=502, Percent_Identity=21.9123505976096, Blast_Score=99, Evalue=9e-22, Organism=Escherichia coli, GI3868720, Length=281, Percent_Identity=28.4697508896797, Blast_Score=97, Evalue=5e-21, Organism=Escherichia coli, GI1788534, Length=254, Percent_Identity=26.3779527559055, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI145693196, Length=439, Percent_Identity=25.9681093394077, Blast_Score=79, Evalue=2e-15, Organism=Escherichia coli, GI1787778, Length=457, Percent_Identity=24.0700218818381, Blast_Score=67, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006478 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.2.1.2 [H]
Molecular weight: Translated: 85243; Mature: 85111
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVEKNACILCSRNCGLVVEVVDGKLGKIRGDDDHPVSKGYLCQKAARLTHYQHHGDRLT CCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHC HPLRRAPDGSFVRVTWDEALDDIAQRLAVLRERHGGDAFAFVGGGGQGNHVGGAYSRQLL CHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHH AAMRSRFAYNSLGQEKTGDFWLNGRLFGRQDCHTTEDVEHADYVLVIGANPYQAHGIPNA HHHHHHHHHHHCCCCCCCCEEECCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCH RDTLRDLKKDPARTLVVVDPRRSETAKLADLHLQVRPGADAYLMSAMLAIMLRDGLIDRE HHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHH FIARRCTGFEFVERALRDVPIAEYARRADVPLEDVERVAHGFATARAACLRIDLGIQHTL HHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCCHHHH HTTLNGYLEKLLFLLTGNFGKRGGNNLHSFLLPVIGHTDERASRNGKQLKRTAHHRMFPI HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHCCCCC AGIYPPNILPDEIELAGEKRVRAVFVDSANPVVTYADSNAYERAFGKLELLVVVDVAMTE CCCCCCCCCCCHHHHCCCCEEEEEEEECCCCEEEECCCCHHHHHHCCEEEEEEEEHHHHH TARLAHYVLPAASQFEKWEATGFNLEFPANAFHLRHPLLPPLGESLAEPEIYTRLLEKMG HHHHHHHHCCCHHHHHHHHCCCCCEECCCCHHHHCCCCCCCCCHHHCCHHHHHHHHHHHH ELPRRFPLLERIARYEPRASKHLAYMGALGVALAANKKWRRYAASVAYRTLGRALPDAAA CCHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHH AAAPLLPLAMMYAHRHHAAVRRAGFRGSRAMLGTALFRAILERRSGTLTSVHEFDEMWRF HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH IRHPDGRVHLHIPEMIDELRALETHTPPGADYPFVLMAGERRAYNANQIYRDPAWRKVDP HHCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEECCCCCCEECC HGSLRIHPDDAAALGVADGGKLVCASATGSIEVVVELDDSVRRGMVTLPHGYGMRYKGGP CCCEEECCCCCCEEEECCCCCEEEEECCCCEEEEEEECCHHHCCEEECCCCCCCCCCCCC PIGPELNRLTSGAHCDPLSRTPYHKYVPVHLRVVDTPVAGPATVEAEPA CCCCCHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC >Mature Secondary Structure AVEKNACILCSRNCGLVVEVVDGKLGKIRGDDDHPVSKGYLCQKAARLTHYQHHGDRLT CCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHC HPLRRAPDGSFVRVTWDEALDDIAQRLAVLRERHGGDAFAFVGGGGQGNHVGGAYSRQLL CHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHH AAMRSRFAYNSLGQEKTGDFWLNGRLFGRQDCHTTEDVEHADYVLVIGANPYQAHGIPNA HHHHHHHHHHHCCCCCCCCEEECCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCH RDTLRDLKKDPARTLVVVDPRRSETAKLADLHLQVRPGADAYLMSAMLAIMLRDGLIDRE HHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCHH FIARRCTGFEFVERALRDVPIAEYARRADVPLEDVERVAHGFATARAACLRIDLGIQHTL HHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCCHHHH HTTLNGYLEKLLFLLTGNFGKRGGNNLHSFLLPVIGHTDERASRNGKQLKRTAHHRMFPI HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHCCCCC AGIYPPNILPDEIELAGEKRVRAVFVDSANPVVTYADSNAYERAFGKLELLVVVDVAMTE CCCCCCCCCCCHHHHCCCCEEEEEEEECCCCEEEECCCCHHHHHHCCEEEEEEEEHHHHH TARLAHYVLPAASQFEKWEATGFNLEFPANAFHLRHPLLPPLGESLAEPEIYTRLLEKMG HHHHHHHHCCCHHHHHHHHCCCCCEECCCCHHHHCCCCCCCCCHHHCCHHHHHHHHHHHH ELPRRFPLLERIARYEPRASKHLAYMGALGVALAANKKWRRYAASVAYRTLGRALPDAAA CCHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHH AAAPLLPLAMMYAHRHHAAVRRAGFRGSRAMLGTALFRAILERRSGTLTSVHEFDEMWRF HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH IRHPDGRVHLHIPEMIDELRALETHTPPGADYPFVLMAGERRAYNANQIYRDPAWRKVDP HHCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEECCCCCCEECC HGSLRIHPDDAAALGVADGGKLVCASATGSIEVVVELDDSVRRGMVTLPHGYGMRYKGGP CCCEEECCCCCCEEEECCCCCEEEEECCCCEEEEEEECCHHHCCEEECCCCCCCCCCCCC PIGPELNRLTSGAHCDPLSRTPYHKYVPVHLRVVDTPVAGPATVEAEPA CCCCCHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]