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The map label for this gene is rraA [C]

Identifier: 83721353

GI number: 83721353

Start: 2255680

End: 2256177

Strand: Direct

Name: rraA [C]

Synonym: BTH_I1992

Alternate gene names: 83721353

Gene position: 2255680-2256177 (Clockwise)

Preceding gene: 83719930

Following gene: 83720420

Centisome position: 59.22

GC content: 72.69

Gene sequence:

>498_bases
ATGATGTTCGCCACCACCGACCTTTGCGACGCGAACGAAGAGCGCCTCGCAGCCGGCACGCTGCGCGTGATCGAGCCCGT
GTTCCGCTCGTTCGGCGGCGTGAGGCGCTTCGCGGGGCCGGCCGCGACGCTCAAGCTGTTCGAGGACAACACGCTCGTGC
GCGCGGCGCTGGAGCAGGACGGCGCGGGGCGCGTGCTCGTCGTCGACGGCGGCGGCAGCCTGCGCTGCGCGCTCGTTGGC
GGCAACCTCGGCAAGCTCGCCGAGAAGAACGGCTGGGTCGGCATCGTCGTGAACGGCTGCGTGCGCGATTCGGCCGAACT
CGCCGAATGTCGCGCCGGCGTGCTCGCGCTCGCCGCGCATCCGCGCAAGAGCGACAAGCGCGGCGCCGGCGTGAGCGACG
TGCCCGTCGACGTGCGCGGCACGCGCATCGCGCCGGGCGACTGGATCTACGCGGACGCCGACGGCATCCTCGTCAGCGAC
GCTGCGCTGCTCGCGTGA

Upstream 100 bases:

>100_bases
GTTCGGCTATTGTAGGGCGAGCCTTCTACCCGCCGCAGCGGGAATTTTCTTCGCCGATAATGCCGGATCGGCACCCTACG
ATCCTCCAGGAGACTTCGAC

Downstream 100 bases:

>100_bases
TGCCGCGGCGTGCCGGCTCGATGGCACGACTGAAACAAGGAGAGAAGATGCAATGCGCCACGTATTCTGCTACGGGACCC
TGAGAGCGGGCGAGATCAAC

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MMFATTDLCDANEERLAAGTLRVIEPVFRSFGGVRRFAGPAATLKLFEDNTLVRAALEQDGAGRVLVVDGGGSLRCALVG
GNLGKLAEKNGWVGIVVNGCVRDSAELAECRAGVLALAAHPRKSDKRGAGVSDVPVDVRGTRIAPGDWIYADADGILVSD
AALLA

Sequences:

>Translated_165_residues
MMFATTDLCDANEERLAAGTLRVIEPVFRSFGGVRRFAGPAATLKLFEDNTLVRAALEQDGAGRVLVVDGGGSLRCALVG
GNLGKLAEKNGWVGIVVNGCVRDSAELAECRAGVLALAAHPRKSDKRGAGVSDVPVDVRGTRIAPGDWIYADADGILVSD
AALLA
>Mature_165_residues
MMFATTDLCDANEERLAAGTLRVIEPVFRSFGGVRRFAGPAATLKLFEDNTLVRAALEQDGAGRVLVVDGGGSLRCALVG
GNLGKLAEKNGWVGIVVNGCVRDSAELAECRAGVLALAAHPRKSDKRGAGVSDVPVDVRGTRIAPGDWIYADADGILVSD
AALLA

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=163, Percent_Identity=45.398773006135, Blast_Score=130, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17134; Mature: 17134

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFATTDLCDANEERLAAGTLRVIEPVFRSFGGVRRFAGPAATLKLFEDNTLVRAALEQD
CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCEEEEECCCC
GAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWVGIVVNGCVRDSAELAECRAGVLALAAH
CCCEEEEEECCCCEEEEEECCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHCCEEEEECC
PRKSDKRGAGVSDVPVDVRGTRIAPGDWIYADADGILVSDAALLA
CCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCCCEEECCHHHCC
>Mature Secondary Structure
MMFATTDLCDANEERLAAGTLRVIEPVFRSFGGVRRFAGPAATLKLFEDNTLVRAALEQD
CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCEEEEECCCC
GAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWVGIVVNGCVRDSAELAECRAGVLALAAH
CCCEEEEEECCCCEEEEEECCCCHHHHCCCCCEEEEEECCCCCCHHHHHHHCCEEEEECC
PRKSDKRGAGVSDVPVDVRGTRIAPGDWIYADADGILVSDAALLA
CCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCCCEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA