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The map label for this gene is rnpA [H]

Identifier: 83721327

GI number: 83721327

Start: 3689283

End: 3689750

Strand: Reverse

Name: rnpA [H]

Synonym: BTH_I3237

Alternate gene names: 83721327

Gene position: 3689750-3689283 (Counterclockwise)

Preceding gene: 83718964

Following gene: 83721157

Centisome position: 96.86

GC content: 67.95

Gene sequence:

>468_bases
GTGTCCGCCGTCCGCAGCGATGCGGGCGAGGCAGCCGCTGTCCCGGGTTCGATTCCGTTGCAAGCGTCCGCCGCCTTTCC
CAAAGCTGCGCGACTTCTGAAAACGGATGAATTTTCATCCGTTTTTCGTTTGCGCCCGTGGCGGCGCACCGCGCACTTCG
TGATCTACGGCAAGCCGACGGGGCGCGAAGCGCGTCTTGGGCTCGTCATCGGCAAGAAGTACGCTGCGCGTGCGGTGACG
CGCAATCTGGTCAAGCGGCTCGCCCGCGAAGCGTTTCGCACGCGTCGCGCCGAGTTCGCCGGCTGGGACATTCTGCTGCG
CCTGCATACGCGCTTCGACAAGAAGGCGATGCCGAGCGCCGCATCCGCGCCGCTCGCGGCGCTGTGCGCGGGCGAGATTC
GCGAGCTGCTCGATCGGGCGGCCCGGGAGATTGCCCGGCGCAACGGGGCGAAGCCCGCGTCCGAGTGA

Upstream 100 bases:

>100_bases
TTCCGCGTGCGCATGAAGACGGCAGGCGGCCGCAAGGTCATCAACGCCCGCCGCGCGAAGGGCCGCAAGCGTCTCGCCAT
CTAAGGGCGGGCCGCGCGCC

Downstream 100 bases:

>100_bases
CGCGCCGACGCCCGTCGCGGACGGCGTGCAGCCGTCCGCCCGATTGGCTCGACCGCGGCGCCATGGCGCCGCCACTGCTA
TGCAAACGGTTCTGATCGCG

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MSAVRSDAGEAAAVPGSIPLQASAAFPKAARLLKTDEFSSVFRLRPWRRTAHFVIYGKPTGREARLGLVIGKKYAARAVT
RNLVKRLAREAFRTRRAEFAGWDILLRLHTRFDKKAMPSAASAPLAALCAGEIRELLDRAAREIARRNGAKPASE

Sequences:

>Translated_155_residues
MSAVRSDAGEAAAVPGSIPLQASAAFPKAARLLKTDEFSSVFRLRPWRRTAHFVIYGKPTGREARLGLVIGKKYAARAVT
RNLVKRLAREAFRTRRAEFAGWDILLRLHTRFDKKAMPSAASAPLAALCAGEIRELLDRAAREIARRNGAKPASE
>Mature_154_residues
SAVRSDAGEAAAVPGSIPLQASAAFPKAARLLKTDEFSSVFRLRPWRRTAHFVIYGKPTGREARLGLVIGKKYAARAVTR
NLVKRLAREAFRTRRAEFAGWDILLRLHTRFDKKAMPSAASAPLAALCAGEIRELLDRAAREIARRNGAKPASE

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- ProDom:   PD003629 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 17025; Mature: 16894

Theoretical pI: Translated: 11.93; Mature: 11.93

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVRSDAGEAAAVPGSIPLQASAAFPKAARLLKTDEFSSVFRLRPWRRTAHFVIYGKPT
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
GREARLGLVIGKKYAARAVTRNLVKRLAREAFRTRRAEFAGWDILLRLHTRFDKKAMPSA
CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHCCCCC
ASAPLAALCAGEIRELLDRAAREIARRNGAKPASE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SAVRSDAGEAAAVPGSIPLQASAAFPKAARLLKTDEFSSVFRLRPWRRTAHFVIYGKPT
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
GREARLGLVIGKKYAARAVTRNLVKRLAREAFRTRRAEFAGWDILLRLHTRFDKKAMPSA
CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHCCCCC
ASAPLAALCAGEIRELLDRAAREIARRNGAKPASE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA