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The map label for this gene is yjjV [H]

Identifier: 83721298

GI number: 83721298

Start: 2135432

End: 2136220

Strand: Direct

Name: yjjV [H]

Synonym: BTH_I1889

Alternate gene names: 83721298

Gene position: 2135432-2136220 (Clockwise)

Preceding gene: 83718639

Following gene: 83718537

Centisome position: 56.06

GC content: 69.84

Gene sequence:

>789_bases
ATGTGGGTCGACACGCATTGCCATCTCGATGCGCCGGAGTTCGACGCCGACCGCGAGGTCGTCGCCGATGCGGCGCGGGC
GGCGGGCGTGTCGCGCATCGTGATCCCGAGCGTCGGCCGGATGAATTTCCCGACGGTGCGCGAACTCGCGCACGCGACGC
AGGGCGCGGTCTACGCGCTCGGCATTCATCCGATGTACACGCCGCATGCGCGCGACGAGGACCTCGACCGGTTGCGGATG
GAAGTCGAGGCGAGCATCGGCGATCCGCGCTTCGTCGGCATCGGCGAGATCGGTCTCGACTACTTCGCGCCGGGGCTCGA
CGAGAACCGGCAGCAGCGCTTCTACGATGCGCAGCTGCGGCTCGCGCGCGACTTCGATCTGCCTGTCGTGTGCCACGTGC
GCAAGTCGCAGGATCGCGTGCTGGCCGGGCTGCGGCGCGCGGGCGTGCGGCGCGGCATCGCGCACGCGTTCAACGGCAGC
TTCCAGCAGGCCGAAGCGTATCTCGCGCAAGGGCTCAAGCTCGGCTTCGGCGGCAACGTGACGTTCGATCGCGCGCGGCA
GATCAGGCGGCTCGCCGGGCAACTGCCGCTCGACGCGCTCGTCGTCGAGACCGACGCGCCCGACATTCCCCCCGAATGGC
GCGACAAGCAGCGCAATACGCCCGACCAGGTGCCGCGCATCGGCGCCGTGATCGCCGAGCTGCGCGGCATCGGCGTCGAC
GCGCTTTCCCTATCCACTTCGGCTAACGCGCTCGCCGCGCTGCCGCGACTCGCGCTTTCGTCCGCATAA

Upstream 100 bases:

>100_bases
ATCGTCACGCACGATCCCGATCTCGCCGCGCGCTGCGACCGCATCCTGCGGCTGCGCGACGGCGTGCTGCACGAGGAGCC
GGCCGTGCCGGTGTGACGCG

Downstream 100 bases:

>100_bases
TCGATTCGTGACGGACACGCGTCGCTCGGGCGGCGCGAATAGACGGAGGCGCGATGCGGGCGAGGTGCGGCGCGTTCGCG
CTCGGCGTCGTCGCGCTGCA

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MWVDTHCHLDAPEFDADREVVADAARAAGVSRIVIPSVGRMNFPTVRELAHATQGAVYALGIHPMYTPHARDEDLDRLRM
EVEASIGDPRFVGIGEIGLDYFAPGLDENRQQRFYDAQLRLARDFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGS
FQQAEAYLAQGLKLGFGGNVTFDRARQIRRLAGQLPLDALVVETDAPDIPPEWRDKQRNTPDQVPRIGAVIAELRGIGVD
ALSLSTSANALAALPRLALSSA

Sequences:

>Translated_262_residues
MWVDTHCHLDAPEFDADREVVADAARAAGVSRIVIPSVGRMNFPTVRELAHATQGAVYALGIHPMYTPHARDEDLDRLRM
EVEASIGDPRFVGIGEIGLDYFAPGLDENRQQRFYDAQLRLARDFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGS
FQQAEAYLAQGLKLGFGGNVTFDRARQIRRLAGQLPLDALVVETDAPDIPPEWRDKQRNTPDQVPRIGAVIAELRGIGVD
ALSLSTSANALAALPRLALSSA
>Mature_262_residues
MWVDTHCHLDAPEFDADREVVADAARAAGVSRIVIPSVGRMNFPTVRELAHATQGAVYALGIHPMYTPHARDEDLDRLRM
EVEASIGDPRFVGIGEIGLDYFAPGLDENRQQRFYDAQLRLARDFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGS
FQQAEAYLAQGLKLGFGGNVTFDRARQIRRLAGQLPLDALVVETDAPDIPPEWRDKQRNTPDQVPRIGAVIAELRGIGVD
ALSLSTSANALAALPRLALSSA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=269, Percent_Identity=31.2267657992565, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI226061614, Length=258, Percent_Identity=29.8449612403101, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI110349734, Length=269, Percent_Identity=31.2267657992565, Blast_Score=104, Evalue=9e-23,
Organism=Homo sapiens, GI226061853, Length=276, Percent_Identity=30.4347826086957, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI226061595, Length=239, Percent_Identity=30.5439330543933, Blast_Score=85, Evalue=8e-17,
Organism=Escherichia coli, GI87082439, Length=250, Percent_Identity=39.2, Blast_Score=180, Evalue=6e-47,
Organism=Escherichia coli, GI1787342, Length=255, Percent_Identity=31.7647058823529, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI48994985, Length=259, Percent_Identity=29.3436293436293, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17559024, Length=224, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=25.2830188679245, Blast_Score=84, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24648690, Length=278, Percent_Identity=26.978417266187, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI221330018, Length=213, Percent_Identity=27.2300469483568, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24586117, Length=217, Percent_Identity=27.1889400921659, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28706; Mature: 28706

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWVDTHCHLDAPEFDADREVVADAARAAGVSRIVIPSVGRMNFPTVRELAHATQGAVYAL
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCEEEE
GIHPMYTPHARDEDLDRLRMEVEASIGDPRFVGIGEIGLDYFAPGLDENRQQRFYDAQLR
ECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHCCCCCCHHHHHHHHHHHH
LARDFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGSFQQAEAYLAQGLKLGFGGNV
HHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCC
TFDRARQIRRLAGQLPLDALVVETDAPDIPPEWRDKQRNTPDQVPRIGAVIAELRGIGVD
CHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCE
ALSLSTSANALAALPRLALSSA
EEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MWVDTHCHLDAPEFDADREVVADAARAAGVSRIVIPSVGRMNFPTVRELAHATQGAVYAL
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCEEEE
GIHPMYTPHARDEDLDRLRMEVEASIGDPRFVGIGEIGLDYFAPGLDENRQQRFYDAQLR
ECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECHHHHHHHCCCCCCHHHHHHHHHHHH
LARDFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGSFQQAEAYLAQGLKLGFGGNV
HHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCC
TFDRARQIRRLAGQLPLDALVVETDAPDIPPEWRDKQRNTPDQVPRIGAVIAELRGIGVD
CHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCE
ALSLSTSANALAALPRLALSSA
EEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]