Click here to switch to the map view.

The map label for this gene is arnB [H]

Identifier: 83721174

GI number: 83721174

Start: 2467433

End: 2468584

Strand: Reverse

Name: arnB [H]

Synonym: BTH_I2193

Alternate gene names: 83721174

Gene position: 2468584-2467433 (Counterclockwise)

Preceding gene: 83718413

Following gene: 83720255

Centisome position: 64.81

GC content: 67.27

Gene sequence:

>1152_bases
ATGAGCCAGACTTCCGTTCCTTTCCTGCCGTTCGTCAAACCCGAGATCGACGAGGAAACCATCCAGGGCGTGGCCGACGT
GCTGCGCTCCGGCTGGATCACGACCGGCCCGCAGTGCCAGCGCTTCGAGGCAGCGCTGTCCGAGTATTGCGGCGGGCGTC
CCGTGCGGGTGTTCAACTCCGGCACGGCGACGCTCGAGATCGGCCTGCGGATCGCGGGCGTAGGCCCCGGCGACGAAGTG
ATCACGACGCCCGCGTCGTGGGTCGCGACGAGCAACGTGATCCTCGAGACGGGCGCGACGCCCGTGTTCGTCGACATCGA
TCCCGCGACGCGCAACCTCGATCTCGATCTCGTCGAAAAGGCGATCACGCCGCGCACGAAGGCGCTCATCCCGGTGTACC
TCGCGGGCCTGCCCGTCGACATGGACCGCCTCTATGCGATCGCGCGCGCGCATCAGCTTCGCGTGATCGAGGACGCCGCG
CAGGCGCTCGGCTCGACGTGGCGCGGCCAGCGCATCGGGGCGATCGGCGACATCGTGTCGTTCAGCTTCCATCCGAACAA
GAACATCACGTCGATCGAAGGCGGCGCGCTCGTGCTCAACGACGAAGCCGAGGCGACGCTCGCGCAGAAGTACCGGCTGC
AGGGCATCACGCGCACGGGGCTCGACGGCATGGACTGCGACGTGCTCGGCGGCAAGTACAATCTGACCGACGTCGCCGCG
CGCGTCGGCTGGGGCCAGCTCGCGCATCTCGAACGCTTCAACGCGACGCGCCGCACGCTTGCGCGCCGCTACTTCGACGC
GTTCGCGGGCGGCCCGGCGCTCGCGCTCGGCGTCGGGCTGCCCGTCGCGGATTTCGAGCACGGCAACTGGCACATGTTCC
AGATCACGCTGCCGCTCGAGAAGCTGTCGATCTCGCGCGGCGAGTTCATGGAGCAGTTGAAGCAACGCGGCATCGGCTCG
GGCGTCCATTACCCGGCCATTCACCTTTTCACGCTGTACCGCGCGCGCGGCTTCAAGGAGGGCATGTTCCCCCACGCCGA
GCGCTTCGGCGCGTCGACCGTCACGCTGCCGCTCTTCACGCAGATGCGCGAAGCGGACGTGCAACGGGTCGTCGACGCCG
TCAACCAGATTTGCGAACAATACGGAAAATAA

Upstream 100 bases:

>100_bases
CGCGCCGACAAAAAGTGACGCACCCGTTCCGGCGGACAGTGTTAAATGCGCGTGTCGGGCAGCGCCCGATTCCTTTCACA
CGACAACGAGCGAAGCTTAC

Downstream 100 bases:

>100_bases
GCGGACATGACTCACCCTGAAACACGCGCGACGAATCCTGAAGTTTCGATCGTCATCCCCGTGTACAACGAGGAAGCGGG
GCTCGCCGCGCTCTTCGCGC

Product: aminotransferase

Products: NA

Alternate protein names: UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase; UDP-4-amino-4-deoxy-L-arabinose aminotransferase [H]

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MSQTSVPFLPFVKPEIDEETIQGVADVLRSGWITTGPQCQRFEAALSEYCGGRPVRVFNSGTATLEIGLRIAGVGPGDEV
ITTPASWVATSNVILETGATPVFVDIDPATRNLDLDLVEKAITPRTKALIPVYLAGLPVDMDRLYAIARAHQLRVIEDAA
QALGSTWRGQRIGAIGDIVSFSFHPNKNITSIEGGALVLNDEAEATLAQKYRLQGITRTGLDGMDCDVLGGKYNLTDVAA
RVGWGQLAHLERFNATRRTLARRYFDAFAGGPALALGVGLPVADFEHGNWHMFQITLPLEKLSISRGEFMEQLKQRGIGS
GVHYPAIHLFTLYRARGFKEGMFPHAERFGASTVTLPLFTQMREADVQRVVDAVNQICEQYGK

Sequences:

>Translated_383_residues
MSQTSVPFLPFVKPEIDEETIQGVADVLRSGWITTGPQCQRFEAALSEYCGGRPVRVFNSGTATLEIGLRIAGVGPGDEV
ITTPASWVATSNVILETGATPVFVDIDPATRNLDLDLVEKAITPRTKALIPVYLAGLPVDMDRLYAIARAHQLRVIEDAA
QALGSTWRGQRIGAIGDIVSFSFHPNKNITSIEGGALVLNDEAEATLAQKYRLQGITRTGLDGMDCDVLGGKYNLTDVAA
RVGWGQLAHLERFNATRRTLARRYFDAFAGGPALALGVGLPVADFEHGNWHMFQITLPLEKLSISRGEFMEQLKQRGIGS
GVHYPAIHLFTLYRARGFKEGMFPHAERFGASTVTLPLFTQMREADVQRVVDAVNQICEQYGK
>Mature_382_residues
SQTSVPFLPFVKPEIDEETIQGVADVLRSGWITTGPQCQRFEAALSEYCGGRPVRVFNSGTATLEIGLRIAGVGPGDEVI
TTPASWVATSNVILETGATPVFVDIDPATRNLDLDLVEKAITPRTKALIPVYLAGLPVDMDRLYAIARAHQLRVIEDAAQ
ALGSTWRGQRIGAIGDIVSFSFHPNKNITSIEGGALVLNDEAEATLAQKYRLQGITRTGLDGMDCDVLGGKYNLTDVAAR
VGWGQLAHLERFNATRRTLARRYFDAFAGGPALALGVGLPVADFEHGNWHMFQITLPLEKLSISRGEFMEQLKQRGIGSG
VHYPAIHLFTLYRARGFKEGMFPHAERFGASTVTLPLFTQMREADVQRVVDAVNQICEQYGK

Specific function: Catalyzes the conversion of UDP-4-keto-arabinose (UDP- Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family. ArnB subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=384, Percent_Identity=41.6666666666667, Blast_Score=257, Evalue=9e-70,
Organism=Escherichia coli, GI2367285, Length=373, Percent_Identity=32.7077747989276, Blast_Score=171, Evalue=6e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022850
- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: =2.6.1.87 [H]

Molecular weight: Translated: 41828; Mature: 41697

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTSVPFLPFVKPEIDEETIQGVADVLRSGWITTGPQCQRFEAALSEYCGGRPVRVFNS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
GTATLEIGLRIAGVGPGDEVITTPASWVATSNVILETGATPVFVDIDPATRNLDLDLVEK
CCEEEEEEEEEEECCCCCCEEECCHHHHEECCEEEECCCCEEEEECCCCCCCCCHHHHHH
AITPRTKALIPVYLAGLPVDMDRLYAIARAHQLRVIEDAAQALGSTWRGQRIGAIGDIVS
HCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEE
FSFHPNKNITSIEGGALVLNDEAEATLAQKYRLQGITRTGLDGMDCDVLGGKYNLTDVAA
EEECCCCCCEEECCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHH
RVGWGQLAHLERFNATRRTLARRYFDAFAGGPALALGVGLPVADFEHGNWHMFQITLPLE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEECHH
KLSISRGEFMEQLKQRGIGSGVHYPAIHLFTLYRARGFKEGMFPHAERFGASTVTLPLFT
HHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCEEEHHHHH
QMREADVQRVVDAVNQICEQYGK
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQTSVPFLPFVKPEIDEETIQGVADVLRSGWITTGPQCQRFEAALSEYCGGRPVRVFNS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
GTATLEIGLRIAGVGPGDEVITTPASWVATSNVILETGATPVFVDIDPATRNLDLDLVEK
CCEEEEEEEEEEECCCCCCEEECCHHHHEECCEEEECCCCEEEEECCCCCCCCCHHHHHH
AITPRTKALIPVYLAGLPVDMDRLYAIARAHQLRVIEDAAQALGSTWRGQRIGAIGDIVS
HCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEE
FSFHPNKNITSIEGGALVLNDEAEATLAQKYRLQGITRTGLDGMDCDVLGGKYNLTDVAA
EEECCCCCCEEECCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHH
RVGWGQLAHLERFNATRRTLARRYFDAFAGGPALALGVGLPVADFEHGNWHMFQITLPLE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEECHH
KLSISRGEFMEQLKQRGIGSGVHYPAIHLFTLYRARGFKEGMFPHAERFGASTVTLPLFT
HHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCEEEHHHHH
QMREADVQRVVDAVNQICEQYGK
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA