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The map label for this gene is yhcK [H]

Identifier: 83721143

GI number: 83721143

Start: 3239066

End: 3240952

Strand: Direct

Name: yhcK [H]

Synonym: BTH_I2824

Alternate gene names: 83721143

Gene position: 3239066-3240952 (Clockwise)

Preceding gene: 83719539

Following gene: 83718575

Centisome position: 85.03

GC content: 65.45

Gene sequence:

>1887_bases
TTGCGTCGACTGCGTCGAACGCTTGCGCGATCGAACGCCCCACAGAAGCGATGCGGCCGCCCTGCCATCGGCGCGCGACC
CGGCACGCGGCTCGGCGCACGCCGGCCCGATTTCGCCGCCGGGCTGCATCAACGCTTCGCACCGCGCCGGTCATGCCCGG
CGCATGTCCCGATCGCCCCCGATCGCCCTGAACGAGCGTGCGCGCCTTCTTCCCGGCAGGCCGCGCGAGAATGTTTCATC
ACCAATTTCACGGCTCGCCTGTGCTGTTCAAAGCTGAACAGCCGGCCGCTTCGGCTACCCGTCCGGGTGCATGGAACCGA
TCCGAGCGTATTGTCAAACGAAAGGCGACGCCTATACTCTCGTCAGACGACACACAAGACGCATAGCGAAACCAAGCGGC
GCGGGCCCCGACGCAACAACGTTCGCCCCCCGGCGTTGCGCGCCGATTTCCCATCTCGATCCAGAAACAGCGTTGCGGAG
GCTACCGTGAGCACTGTCTTCACAGCCCATGAATCGCCGCGTGTAATCAACATCATCGCCCGGCTCTACACCGCATGCCT
GCTGATCGGCTTCGCGCTCGTGCCGGCGTACCTGATCGTCTACGTGCGGTTCTTCATCGATCCGCGGCTCGTCTTCGAGA
ACCATCAGTTCCACGAGCTGGCGATCGCCGCCGCGACGCTCGAGGGCCTCTTCGTCACCTACGTGACGTGGCGCTGCTAT
CTGTCGTCGGGCGAGCCGCTGCTGCGCTGGCTCACGCTCGGCTTCTTCGGCTTCGCGCTGATCTACTCGCTGCACGGCGC
GTTCACCGGCATGGCGCACCAGAACATCTGGCTGTTCCTGCTGTACGGCCCCGCATCGCGCCTCGTGATGTCGATCCTGC
TGCTCGTCGGGCAACTGTCGTACTTCAGGAACGCCGATCCGCCCGAGCGTCGCACGCTGCTGTCGACATGGCTGCCGTGG
ATCGCCGGCTTCGTGCTCGTCTGCGTCGCGGTCGCCGCCATTGCGTACTCGCCGATCGCCGGCCATCTGTGGACGCGCGC
GTCGATGGAGGGCGGCGCGATGATCGTGTCGCTCGTCAACGTCGCGCTGCTGCTCGCGCGTCGCATCCGCACGCCGTTGA
TGCTCGTCTACGGCATCTCGGTGATGTCGTTCGCGCTGTCGTCGATCGCATTCATTCTCGGCAAGCCGTGGAACCACATG
TGGTGGCTCGCGCATGCGATCTTCGCGGCCGGATTCTTCATGCTGAGCTTCGGCGTCGTTCAGGCATTGATCACGACCCG
CTCGTTCGCGACCGTCTACAGCCAGCAGGATCTGATGGCGCGGCTCGCCGAATCGATGGCGCGCACCGAGGGCGCGCTGC
AGGAGCTCAAGCGCACCAACCAGAAGCTCGAGCATCTCGCGACCACCGATCCGCTGACGGGCGCGTCGAACCGGCGCAAG
TTCATCGAGCAGATGCAGGCGGAAATCGCGCGCGCGAAGCGCGACGGCACTGCGTTCTCGCTGCTCGCGCTCGATCTCGA
CAACTTCAAGACGATCAACGACAACTATGGCCATCAGGTCGGCGACGTCGTGCTGCGCAACTTCGTGCGTCAGTGCCTTG
CCGCGATCCGTCCTTACGACCACATCGCGCGCGTCGGCGGCGAGGAGTTCATGGTGCTGCTGCCGCGCATGCTCGCCGAC
ACGGCGAGCGGAATCGCGGAGCGCGTGCGGACCACGATCGCGAACGCGTCGTTCGGCATCGACGGCACGCATACGCCCGT
GACCGTGAGCATCGGCGTGTCGCAGTACGGGCGCGACGGCGACACCGTCGACGAAATCCTGAGCGCCGCCGACAAGCTGC
TCTATCGCGCGAAAAACGAGGGGCGCAATCGCGTCGTCGCGTCGTAG

Upstream 100 bases:

>100_bases
GAGCCGGTCCATCGATTAACTATATTCACGCCGACTCCGCGTAGCGGCCCTTTCGCGACCTATGAAAACCCTACGCAGAC
GAAACGGCGGGACATCACGT

Downstream 100 bases:

>100_bases
GCGGCGGCACGGACGGTCGGACCGGATGGCCGCATCGGCGGTTGTGCGGGCGCGGACCGGGCGACGGGCACGCGCGCCGC
GCCCCAAACCGGCGTCGCAC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 628; Mature: 628

Protein sequence:

>628_residues
MRRLRRTLARSNAPQKRCGRPAIGARPGTRLGARRPDFAAGLHQRFAPRRSCPAHVPIAPDRPERACAPSSRQAARECFI
TNFTARLCCSKLNSRPLRLPVRVHGTDPSVLSNERRRLYSRQTTHKTHSETKRRGPRRNNVRPPALRADFPSRSRNSVAE
ATVSTVFTAHESPRVINIIARLYTACLLIGFALVPAYLIVYVRFFIDPRLVFENHQFHELAIAAATLEGLFVTYVTWRCY
LSSGEPLLRWLTLGFFGFALIYSLHGAFTGMAHQNIWLFLLYGPASRLVMSILLLVGQLSYFRNADPPERRTLLSTWLPW
IAGFVLVCVAVAAIAYSPIAGHLWTRASMEGGAMIVSLVNVALLLARRIRTPLMLVYGISVMSFALSSIAFILGKPWNHM
WWLAHAIFAAGFFMLSFGVVQALITTRSFATVYSQQDLMARLAESMARTEGALQELKRTNQKLEHLATTDPLTGASNRRK
FIEQMQAEIARAKRDGTAFSLLALDLDNFKTINDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLAD
TASGIAERVRTTIANASFGIDGTHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVAS

Sequences:

>Translated_628_residues
MRRLRRTLARSNAPQKRCGRPAIGARPGTRLGARRPDFAAGLHQRFAPRRSCPAHVPIAPDRPERACAPSSRQAARECFI
TNFTARLCCSKLNSRPLRLPVRVHGTDPSVLSNERRRLYSRQTTHKTHSETKRRGPRRNNVRPPALRADFPSRSRNSVAE
ATVSTVFTAHESPRVINIIARLYTACLLIGFALVPAYLIVYVRFFIDPRLVFENHQFHELAIAAATLEGLFVTYVTWRCY
LSSGEPLLRWLTLGFFGFALIYSLHGAFTGMAHQNIWLFLLYGPASRLVMSILLLVGQLSYFRNADPPERRTLLSTWLPW
IAGFVLVCVAVAAIAYSPIAGHLWTRASMEGGAMIVSLVNVALLLARRIRTPLMLVYGISVMSFALSSIAFILGKPWNHM
WWLAHAIFAAGFFMLSFGVVQALITTRSFATVYSQQDLMARLAESMARTEGALQELKRTNQKLEHLATTDPLTGASNRRK
FIEQMQAEIARAKRDGTAFSLLALDLDNFKTINDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLAD
TASGIAERVRTTIANASFGIDGTHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVAS
>Mature_628_residues
MRRLRRTLARSNAPQKRCGRPAIGARPGTRLGARRPDFAAGLHQRFAPRRSCPAHVPIAPDRPERACAPSSRQAARECFI
TNFTARLCCSKLNSRPLRLPVRVHGTDPSVLSNERRRLYSRQTTHKTHSETKRRGPRRNNVRPPALRADFPSRSRNSVAE
ATVSTVFTAHESPRVINIIARLYTACLLIGFALVPAYLIVYVRFFIDPRLVFENHQFHELAIAAATLEGLFVTYVTWRCY
LSSGEPLLRWLTLGFFGFALIYSLHGAFTGMAHQNIWLFLLYGPASRLVMSILLLVGQLSYFRNADPPERRTLLSTWLPW
IAGFVLVCVAVAAIAYSPIAGHLWTRASMEGGAMIVSLVNVALLLARRIRTPLMLVYGISVMSFALSSIAFILGKPWNHM
WWLAHAIFAAGFFMLSFGVVQALITTRSFATVYSQQDLMARLAESMARTEGALQELKRTNQKLEHLATTDPLTGASNRRK
FIEQMQAEIARAKRDGTAFSLLALDLDNFKTINDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPRMLAD
TASGIAERVRTTIANASFGIDGTHTPVTVSIGVSQYGRDGDTVDEILSAADKLLYRAKNEGRNRVVAS

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=44.1988950276243, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=37.8698224852071, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=35.1851851851852, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=38.0952380952381, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1788381, Length=171, Percent_Identity=32.7485380116959, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1788085, Length=179, Percent_Identity=32.9608938547486, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=33.9506172839506, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=31.875, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787541, Length=172, Percent_Identity=31.9767441860465, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI87081974, Length=170, Percent_Identity=26.4705882352941, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081977, Length=183, Percent_Identity=30.6010928961749, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788956, Length=173, Percent_Identity=32.3699421965318, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 70045; Mature: 70045

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLRRTLARSNAPQKRCGRPAIGARPGTRLGARRPDFAAGLHQRFAPRRSCPAHVPIAP
CHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
DRPERACAPSSRQAARECFITNFTARLCCSKLNSRPLRLPVRVHGTDPSVLSNERRRLYS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHH
RQTTHKTHSETKRRGPRRNNVRPPALRADFPSRSRNSVAEATVSTVFTAHESPRVINIIA
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
RLYTACLLIGFALVPAYLIVYVRFFIDPRLVFENHQFHELAIAAATLEGLFVTYVTWRCY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
LSSGEPLLRWLTLGFFGFALIYSLHGAFTGMAHQNIWLFLLYGPASRLVMSILLLVGQLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
YFRNADPPERRTLLSTWLPWIAGFVLVCVAVAAIAYSPIAGHLWTRASMEGGAMIVSLVN
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHH
VALLLARRIRTPLMLVYGISVMSFALSSIAFILGKPWNHMWWLAHAIFAAGFFMLSFGVV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
QALITTRSFATVYSQQDLMARLAESMARTEGALQELKRTNQKLEHLATTDPLTGASNRRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
FIEQMQAEIARAKRDGTAFSLLALDLDNFKTINDNYGHQVGDVVLRNFVRQCLAAIRPYD
HHHHHHHHHHHHHCCCCEEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCHH
HIARVGGEEFMVLLPRMLADTASGIAERVRTTIANASFGIDGTHTPVTVSIGVSQYGRDG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHCCCCC
DTVDEILSAADKLLYRAKNEGRNRVVAS
CHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRRLRRTLARSNAPQKRCGRPAIGARPGTRLGARRPDFAAGLHQRFAPRRSCPAHVPIAP
CHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
DRPERACAPSSRQAARECFITNFTARLCCSKLNSRPLRLPVRVHGTDPSVLSNERRRLYS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHH
RQTTHKTHSETKRRGPRRNNVRPPALRADFPSRSRNSVAEATVSTVFTAHESPRVINIIA
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
RLYTACLLIGFALVPAYLIVYVRFFIDPRLVFENHQFHELAIAAATLEGLFVTYVTWRCY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
LSSGEPLLRWLTLGFFGFALIYSLHGAFTGMAHQNIWLFLLYGPASRLVMSILLLVGQLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHH
YFRNADPPERRTLLSTWLPWIAGFVLVCVAVAAIAYSPIAGHLWTRASMEGGAMIVSLVN
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHH
VALLLARRIRTPLMLVYGISVMSFALSSIAFILGKPWNHMWWLAHAIFAAGFFMLSFGVV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
QALITTRSFATVYSQQDLMARLAESMARTEGALQELKRTNQKLEHLATTDPLTGASNRRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
FIEQMQAEIARAKRDGTAFSLLALDLDNFKTINDNYGHQVGDVVLRNFVRQCLAAIRPYD
HHHHHHHHHHHHHCCCCEEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCHH
HIARVGGEEFMVLLPRMLADTASGIAERVRTTIANASFGIDGTHTPVTVSIGVSQYGRDG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHCCCCC
DTVDEILSAADKLLYRAKNEGRNRVVAS
CHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]