Click here to switch to the map view.

The map label for this gene is yegW [H]

Identifier: 83720980

GI number: 83720980

Start: 492603

End: 493337

Strand: Direct

Name: yegW [H]

Synonym: BTH_I0446

Alternate gene names: 83720980

Gene position: 492603-493337 (Clockwise)

Preceding gene: 284159407

Following gene: 83721439

Centisome position: 12.93

GC content: 73.74

Gene sequence:

>735_bases
ATGGACATCGGCTGGTCGGCGCTGGCGCCCGATGCGCGCAGCGACACCCCGCTCTACCTGCAGCTCGCACGCAATCTCGC
GGGCGCGATTCACGGCGGCGCCTGGCGCGCCGGCGAAGCGCTGCCGTCCGAGCGCGGCTTGTCGGCGGCGGCGGGCGTGT
CGCGCATCACCGCGCGCCGCGCGCTCGCGCTCCTCGTCGAGCAGGGGCTCATCCGGCGCGTGCGCGGCGCGGGCAGCTTC
ATCACGCCGCGCGTGGCCGACCCGCTGTCGCGGCTCGTCGGGTTCACCGCGAAGATGCGCCAGCGCGGCTTCGCGCCCGA
TTCGGTGTGGCTCGCGCGCAGCCTGCGCGCGGCGAGCCGCGACGAGCTCGCGCGCTTTAGCCTGTCGCCCGGCGCGACGG
TCGCGCGCCTCGAACGGCTGCGGCGCGCGGACGGCGTCGTGATGGCGTACGAGCGCTCGACGCTGCCCGCGACCTGCGTG
CCCGAGCCGCAGGCGCTAGAAGGGTCGCTGTACAGCTACCTGCAGTCGCGCGGTCTCGACGTGGTGCGCGCGTCGCAGCG
CTTTCGCGCGACGCGCGCGTCGGCCGATGTCGCACAGTGGCTCGGCCTCGCGCCGGGTGCGGCGCTCCTCGTCATCACGC
GGATCGGTTACGGCGCCGATCGGCGGGCGATCGAAGCGACCGAAACGTATTGCCGCGACGATTACTACGATTTCGTCGCC
GAGCTGAAACGCTGA

Upstream 100 bases:

>100_bases
TCCGGCATTCCGATTTCGATCAAATTGACTGGTATTATTTTGGTTATATAATGGCCTCGCTTTTCGGACGACGCCCTCCC
GTTTTCGCCCCCGGAGACCT

Downstream 100 bases:

>100_bases
CACGACAGACTGTCCGCGGCAGCCCGGGCGACTGCAAGCCCTCTCGCAAGCAGCAAGCAGTACCGACCCCATACGCATCA
CCAGATATCAGAGAACGTCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MDIGWSALAPDARSDTPLYLQLARNLAGAIHGGAWRAGEALPSERGLSAAAGVSRITARRALALLVEQGLIRRVRGAGSF
ITPRVADPLSRLVGFTAKMRQRGFAPDSVWLARSLRAASRDELARFSLSPGATVARLERLRRADGVVMAYERSTLPATCV
PEPQALEGSLYSYLQSRGLDVVRASQRFRATRASADVAQWLGLAPGAALLVITRIGYGADRRAIEATETYCRDDYYDFVA
ELKR

Sequences:

>Translated_244_residues
MDIGWSALAPDARSDTPLYLQLARNLAGAIHGGAWRAGEALPSERGLSAAAGVSRITARRALALLVEQGLIRRVRGAGSF
ITPRVADPLSRLVGFTAKMRQRGFAPDSVWLARSLRAASRDELARFSLSPGATVARLERLRRADGVVMAYERSTLPATCV
PEPQALEGSLYSYLQSRGLDVVRASQRFRATRASADVAQWLGLAPGAALLVITRIGYGADRRAIEATETYCRDDYYDFVA
ELKR
>Mature_244_residues
MDIGWSALAPDARSDTPLYLQLARNLAGAIHGGAWRAGEALPSERGLSAAAGVSRITARRALALLVEQGLIRRVRGAGSF
ITPRVADPLSRLVGFTAKMRQRGFAPDSVWLARSLRAASRDELARFSLSPGATVARLERLRRADGVVMAYERSTLPATCV
PEPQALEGSLYSYLQSRGLDVVRASQRFRATRASADVAQWLGLAPGAALLVITRIGYGADRRAIEATETYCRDDYYDFVA
ELKR

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=230, Percent_Identity=31.7391304347826, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786950, Length=226, Percent_Identity=26.9911504424779, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI87082252, Length=232, Percent_Identity=27.1551724137931, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1790540, Length=212, Percent_Identity=30.188679245283, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26504; Mature: 26504

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIGWSALAPDARSDTPLYLQLARNLAGAIHGGAWRAGEALPSERGLSAAAGVSRITARR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ALALLVEQGLIRRVRGAGSFITPRVADPLSRLVGFTAKMRQRGFAPDSVWLARSLRAASR
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
DELARFSLSPGATVARLERLRRADGVVMAYERSTLPATCVPEPQALEGSLYSYLQSRGLD
HHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCH
VVRASQRFRATRASADVAQWLGLAPGAALLVITRIGYGADRRAIEATETYCRDDYYDFVA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ELKR
HHCC
>Mature Secondary Structure
MDIGWSALAPDARSDTPLYLQLARNLAGAIHGGAWRAGEALPSERGLSAAAGVSRITARR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ALALLVEQGLIRRVRGAGSFITPRVADPLSRLVGFTAKMRQRGFAPDSVWLARSLRAASR
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
DELARFSLSPGATVARLERLRRADGVVMAYERSTLPATCVPEPQALEGSLYSYLQSRGLD
HHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCH
VVRASQRFRATRASADVAQWLGLAPGAALLVITRIGYGADRRAIEATETYCRDDYYDFVA
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ELKR
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]