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The map label for this gene is gylR [H]

Identifier: 83720910

GI number: 83720910

Start: 402698

End: 403720

Strand: Reverse

Name: gylR [H]

Synonym: BTH_I0361

Alternate gene names: 83720910

Gene position: 403720-402698 (Counterclockwise)

Preceding gene: 83720964

Following gene: 83718925

Centisome position: 10.6

GC content: 69.01

Gene sequence:

>1023_bases
TTGGCCGTCGCGCGTGCCGTCCTTGAGCGAAGCGAGTTTCATAGGGAAGTGAGCCGTTGTAGTGACGATGGAAGGAATCT
ATTTTACGATGGTGAATCCGCACGGCGGCACGCGCCGCGAGCCGCGCGGGTGTTCCACTCCCATTCTTCCCGCAACGCCG
TGAACAAGTTCGCCTCAAACGCCTCCGCCCCCCCCGACGACGATCTCGCCGACGACCACGACACCGGCGAGGAAAAGGTC
CGCTCCGGCATCCAGTCGATCGAAGTGGGCTTTCGGTTGCTCGACGTGCTGACGAGCGAGCCGCGCGCGATGATGCTGCG
CGACCTCGCGCAACGCGCGGCGATGAGTCCGGCGAAGGCGCACCGCTATCTCGTCAGTTTCCAGCGGCTCGGGCTCGTGT
CGCAGGACCCGGTGTCGGGCCGCTACGAGCTCGGCGGCTTCGCGCTGCAGATGGGTCTCGCGCGCCTCGCGCGCGTCGAC
GGCGTGAAGCTCGCGCGGATCGCGCTCACCGCGCTGCGCGATCAGCTCGATCAGACGGTCGGCATCGCGGTATGGGGCAA
CCAGGGGCCGACGATCGTCCACTGGATGGAGTCGAGCCACCCGGCGAAGGCGTCGCTCAAGCTCGGTGACGTGATGCCGC
TCCTCGGCTCGGCGACGGGCCTCGTGTTCGCCGCGTACCTGCCGCGCAGCAAGACGGCCGCGATGATCGAGCGCGAACTC
GCCGACACGCGGCGCGCGGCGCACTACACCGGCCCACGCACGCACGCGGAAGTCGAGGCCGCGCTCGCCGACGTGCGCGC
GCATCGCGCGGCGCGCGTCGAGGGCATGCTGCTGCCGACGATCAACGCGTTCGGCATGCCCGTGTTCGATGCGCTCGGCG
ATCTCGCGCTCGCGATCATCGCGCTCGGTCACGAAGGCGCGTTCGACATCCGCTGGGGCGGCGAGGTCGACACCGCGCTG
CGCGCCTGCGCGCAGAAGCTGTCGTACGAGCTTGGGTATAGTGACGGGGCGCGCGACGCCTGA

Upstream 100 bases:

>100_bases
GCGGCGCGTAGAACGCCCAGTCGTCGAGCACGCGCTGCAGCGTCGGCGCGATCGCGTCGGCGATCGCCGCCGTGTGCAGG
TCGCGGGATACGACGATCAA

Downstream 100 bases:

>100_bases
CGGGCGCCGCCGCATCCCGGGCCGCGCGACGCGCGCGCCCCGTTTCGTCGCCGTTCGAGAGGCTCGCCCGCTCCTGATGC
CGTCGTCGTCCATCGTCTCG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MAVARAVLERSEFHREVSRCSDDGRNLFYDGESARRHAPRAARVFHSHSSRNAVNKFASNASAPPDDDLADDHDTGEEKV
RSGIQSIEVGFRLLDVLTSEPRAMMLRDLAQRAAMSPAKAHRYLVSFQRLGLVSQDPVSGRYELGGFALQMGLARLARVD
GVKLARIALTALRDQLDQTVGIAVWGNQGPTIVHWMESSHPAKASLKLGDVMPLLGSATGLVFAAYLPRSKTAAMIEREL
ADTRRAAHYTGPRTHAEVEAALADVRAHRAARVEGMLLPTINAFGMPVFDALGDLALAIIALGHEGAFDIRWGGEVDTAL
RACAQKLSYELGYSDGARDA

Sequences:

>Translated_340_residues
MAVARAVLERSEFHREVSRCSDDGRNLFYDGESARRHAPRAARVFHSHSSRNAVNKFASNASAPPDDDLADDHDTGEEKV
RSGIQSIEVGFRLLDVLTSEPRAMMLRDLAQRAAMSPAKAHRYLVSFQRLGLVSQDPVSGRYELGGFALQMGLARLARVD
GVKLARIALTALRDQLDQTVGIAVWGNQGPTIVHWMESSHPAKASLKLGDVMPLLGSATGLVFAAYLPRSKTAAMIEREL
ADTRRAAHYTGPRTHAEVEAALADVRAHRAARVEGMLLPTINAFGMPVFDALGDLALAIIALGHEGAFDIRWGGEVDTAL
RACAQKLSYELGYSDGARDA
>Mature_339_residues
AVARAVLERSEFHREVSRCSDDGRNLFYDGESARRHAPRAARVFHSHSSRNAVNKFASNASAPPDDDLADDHDTGEEKVR
SGIQSIEVGFRLLDVLTSEPRAMMLRDLAQRAAMSPAKAHRYLVSFQRLGLVSQDPVSGRYELGGFALQMGLARLARVDG
VKLARIALTALRDQLDQTVGIAVWGNQGPTIVHWMESSHPAKASLKLGDVMPLLGSATGLVFAAYLPRSKTAAMIERELA
DTRRAAHYTGPRTHAEVEAALADVRAHRAARVEGMLLPTINAFGMPVFDALGDLALAIIALGHEGAFDIRWGGEVDTALR
ACAQKLSYELGYSDGARDA

Specific function: May be an activator protein for the gylABX operon [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1789999, Length=273, Percent_Identity=25.6410256410256, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788131, Length=241, Percent_Identity=24.0663900414938, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786468, Length=154, Percent_Identity=24.6753246753247, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 36877; Mature: 36746

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVARAVLERSEFHREVSRCSDDGRNLFYDGESARRHAPRAARVFHSHSSRNAVNKFASN
CHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCHHHHHHHHCCCHHHHHHHHHC
ASAPPDDDLADDHDTGEEKVRSGIQSIEVGFRLLDVLTSEPRAMMLRDLAQRAAMSPAKA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHH
HRYLVSFQRLGLVSQDPVSGRYELGGFALQMGLARLARVDGVKLARIALTALRDQLDQTV
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHE
GIAVWGNQGPTIVHWMESSHPAKASLKLGDVMPLLGSATGLVFAAYLPRSKTAAMIEREL
EEEEECCCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ADTRRAAHYTGPRTHAEVEAALADVRAHRAARVEGMLLPTINAFGMPVFDALGDLALAII
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCHHHCCCHHHHHHHHHHHHHH
ALGHEGAFDIRWGGEVDTALRACAQKLSYELGYSDGARDA
HHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AVARAVLERSEFHREVSRCSDDGRNLFYDGESARRHAPRAARVFHSHSSRNAVNKFASN
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCHHHHHHHHCCCHHHHHHHHHC
ASAPPDDDLADDHDTGEEKVRSGIQSIEVGFRLLDVLTSEPRAMMLRDLAQRAAMSPAKA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHH
HRYLVSFQRLGLVSQDPVSGRYELGGFALQMGLARLARVDGVKLARIALTALRDQLDQTV
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHE
GIAVWGNQGPTIVHWMESSHPAKASLKLGDVMPLLGSATGLVFAAYLPRSKTAAMIEREL
EEEEECCCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ADTRRAAHYTGPRTHAEVEAALADVRAHRAARVEGMLLPTINAFGMPVFDALGDLALAII
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCHHHCCCHHHHHHHHHHHHHH
ALGHEGAFDIRWGGEVDTALRACAQKLSYELGYSDGARDA
HHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3225846; 12000953 [H]