Click here to switch to the map view.

The map label for this gene is lsrR [H]

Identifier: 83720901

GI number: 83720901

Start: 806910

End: 807929

Strand: Reverse

Name: lsrR [H]

Synonym: BTH_I0701

Alternate gene names: 83720901

Gene position: 807929-806910 (Counterclockwise)

Preceding gene: 83720348

Following gene: 83718659

Centisome position: 21.21

GC content: 70.78

Gene sequence:

>1020_bases
GTGCGAATTTTCCCGGCGCGCGACGGCCGGCCTGAAGCCCGTCGCGCGCGCCCGACCCGAGACTCCGCCACCGTGTCCAA
GTCCTCCGAAAAACTCGATCTCGCGACGCGCGCCGCCTGGCTCTATTACGTCGCGGGCGATACGCAAAACGAAATCGCCG
AGAAGCTGCAAGTGTCGCGCCCCGTCGCGCAGCGCCTCGTCGCGTTCGCGGTGGAGAAGAACCTGATCCGCGTGCGCGTC
GACCACCGCATCGCCGACTGCCTCGATCTCGCCGCGCAGCTGTCGAAGCGCTACGGCCTCGCGATGTGCGAAGTCGTGCC
GATCGACGGCGACGCGCCCGACGCGATCGACCGCAAGCTCGCGGTCGCCGGCGCGCAGGTGATGGAGCGCTACCTGAGCG
AAGACAAGCCGATGGTGATCGCGGTCAGCAGCGGCCGCACGCTGAAGGCCGCCGTCGCGCAGATCGCGCAGCTCGAGCGG
CCGCAGCACCGGCTCGTGTCGATGGTGGGCGCGATCGCGCAGGACGGCTCGTCGAACCCGTACGACGTCGCGCAGCACAT
CTCCGAGAAGACGGGCGGCAAGCACTTCCTGCTGCCCGCGCCGCTCTTCGCGGACAGCGAGACCGAGCGCGCGCAGTGGT
GCAATCACCGGCTGTACCGGATCGTCGAGAAGCTGTCGGCGCAGGCGGACGTCGCGTTCGTCGGCGTCGGCAACATCGGC
GCGCACTGCCCGCTGTTCGAGGACGGCTTCATCACCGAGGGCGAGTTGAACGAGATGGTCGAGCTCGGCGCGGTGGCCGA
GATGCTTGGCCTGCCGATCGACGCGCAGGGGCGGCCGGTCGTCGCGTCGACGAGCACGCGCGTGACGAGCGTTGCGCTCG
ACGCGCCGCCGAAGCGCCCGACGATCGGCTTCGCGGGCGGGCCGCGCAAGCGCGCCGCGGTGCTCGCCGCGCTGCGCGGC
AGATGGCTCTCGGGGCTCGTGACCGACGAGACCTGCGCGCGTGCCGCGCTCGCGGAGTAA

Upstream 100 bases:

>100_bases
CTGCGCGCGCGACTCGACGCGTTCCGCGCGCTGTACCGGCACGTGCGGCCGCTCTTCGAGCCGACGCGCGCGCGGCTCGC
GTGAGCGCGTTTGCGCTACA

Downstream 100 bases:

>100_bases
CGCTCTCGACGGGGCTTGCGCGCACCGGCCTGCGCAGCCGACGCAAACGCCGCCCCCACCCCGCAACGTGCCCCCGTCAC
GCGGCCGGCGACGCCGCCCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MRIFPARDGRPEARRARPTRDSATVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRV
DHRIADCLDLAAQLSKRYGLAMCEVVPIDGDAPDAIDRKLAVAGAQVMERYLSEDKPMVIAVSSGRTLKAAVAQIAQLER
PQHRLVSMVGAIAQDGSSNPYDVAQHISEKTGGKHFLLPAPLFADSETERAQWCNHRLYRIVEKLSAQADVAFVGVGNIG
AHCPLFEDGFITEGELNEMVELGAVAEMLGLPIDAQGRPVVASTSTRVTSVALDAPPKRPTIGFAGGPRKRAAVLAALRG
RWLSGLVTDETCARAALAE

Sequences:

>Translated_339_residues
MRIFPARDGRPEARRARPTRDSATVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRV
DHRIADCLDLAAQLSKRYGLAMCEVVPIDGDAPDAIDRKLAVAGAQVMERYLSEDKPMVIAVSSGRTLKAAVAQIAQLER
PQHRLVSMVGAIAQDGSSNPYDVAQHISEKTGGKHFLLPAPLFADSETERAQWCNHRLYRIVEKLSAQADVAFVGVGNIG
AHCPLFEDGFITEGELNEMVELGAVAEMLGLPIDAQGRPVVASTSTRVTSVALDAPPKRPTIGFAGGPRKRAAVLAALRG
RWLSGLVTDETCARAALAE
>Mature_339_residues
MRIFPARDGRPEARRARPTRDSATVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRV
DHRIADCLDLAAQLSKRYGLAMCEVVPIDGDAPDAIDRKLAVAGAQVMERYLSEDKPMVIAVSSGRTLKAAVAQIAQLER
PQHRLVSMVGAIAQDGSSNPYDVAQHISEKTGGKHFLLPAPLFADSETERAQWCNHRLYRIVEKLSAQADVAFVGVGNIG
AHCPLFEDGFITEGELNEMVELGAVAEMLGLPIDAQGRPVVASTSTRVTSVALDAPPKRPTIGFAGGPRKRAAVLAALRG
RWLSGLVTDETCARAALAE

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFG operon and its own transcription. In the presence of AI- 2, lsrR is inactivated by binding phospho-AI-2, leading to the trans

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=324, Percent_Identity=27.1604938271605, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI87082414, Length=313, Percent_Identity=25.8785942492013, Blast_Score=94, Evalue=9e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36640; Mature: 36640

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIFPARDGRPEARRARPTRDSATVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSR
CCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHHHEEEEEEEECCCHHHHHHHHHHHH
PVAQRLVAFAVEKNLIRVRVDHRIADCLDLAAQLSKRYGLAMCEVVPIDGDAPDAIDRKL
HHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
AVAGAQVMERYLSEDKPMVIAVSSGRTLKAAVAQIAQLERPQHRLVSMVGAIAQDGSSNP
HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCH
YDVAQHISEKTGGKHFLLPAPLFADSETERAQWCNHRLYRIVEKLSAQADVAFVGVGNIG
HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
AHCPLFEDGFITEGELNEMVELGAVAEMLGLPIDAQGRPVVASTSTRVTSVALDAPPKRP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCCC
TIGFAGGPRKRAAVLAALRGRWLSGLVTDETCARAALAE
EECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MRIFPARDGRPEARRARPTRDSATVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSR
CCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHHHEEEEEEEECCCHHHHHHHHHHHH
PVAQRLVAFAVEKNLIRVRVDHRIADCLDLAAQLSKRYGLAMCEVVPIDGDAPDAIDRKL
HHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
AVAGAQVMERYLSEDKPMVIAVSSGRTLKAAVAQIAQLERPQHRLVSMVGAIAQDGSSNP
HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCH
YDVAQHISEKTGGKHFLLPAPLFADSETERAQWCNHRLYRIVEKLSAQADVAFVGVGNIG
HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
AHCPLFEDGFITEGELNEMVELGAVAEMLGLPIDAQGRPVVASTSTRVTSVALDAPPKRP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCCCC
TIGFAGGPRKRAAVLAALRGRWLSGLVTDETCARAALAE
EECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA