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The map label for this gene is yafC [C]

Identifier: 83720835

GI number: 83720835

Start: 3699062

End: 3699427

Strand: Reverse

Name: yafC [C]

Synonym: BTH_I3245

Alternate gene names: 83720835

Gene position: 3699427-3699062 (Counterclockwise)

Preceding gene: 83718900

Following gene: 83718984

Centisome position: 97.12

GC content: 66.67

Gene sequence:

>366_bases
ATGGACAACCTGAACGGCATCGTCGCGTTCGTCCGCACGGCCGAGACGCTCAGCTTCGTCGCGGCGGGACGCAAGCTCGG
CGTATCGGCGTCGGCGATCGGCAAGACGATCGCGAAGCTCGAGCGCTCGCTCGGCGTGCGGCTCTTCCACAGGACGACGC
GCAAGGTCACGCTGACCGACGAAGGACGGCATTTCCACGAGCGCTGTCATCGCGCGCTCGAAGAACTGCGCGACGCGCAA
GCCGCCCTGTCGCAGAGCGCGCAAACGCCGCGCGGCCGGCTGCGCGTGAGCCTGCCCGTGATCGGCTACCGGTTTCTGCT
GCCCGTCCTGCCGGAATTCGAGCCTGTCAGATTTTTAGTGTGCTGA

Upstream 100 bases:

>100_bases
GAACGATAATCCGGATTCAATCGACGAAAAACAACGCAAGATTCCGTATATTACGGACTTGAATTCCGCAATTTCGGGTA
ACGAAGGGAACCGGAGCGAT

Downstream 100 bases:

>100_bases
GGTCATGAGACGATAACGGAATTAACGTCCTATGACCGATGCAACAGTGAGCAAGAAGAGCAAGAATCCGAAGGCACCAA
AGCTGTTTCCCGATGAGCTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MDNLNGIVAFVRTAETLSFVAAGRKLGVSASAIGKTIAKLERSLGVRLFHRTTRKVTLTDEGRHFHERCHRALEELRDAQ
AALSQSAQTPRGRLRVSLPVIGYRFLLPVLPEFEPVRFLVC

Sequences:

>Translated_121_residues
MDNLNGIVAFVRTAETLSFVAAGRKLGVSASAIGKTIAKLERSLGVRLFHRTTRKVTLTDEGRHFHERCHRALEELRDAQ
AALSQSAQTPRGRLRVSLPVIGYRFLLPVLPEFEPVRFLVC
>Mature_121_residues
MDNLNGIVAFVRTAETLSFVAAGRKLGVSASAIGKTIAKLERSLGVRLFHRTTRKVTLTDEGRHFHERCHRALEELRDAQ
AALSQSAQTPRGRLRVSLPVIGYRFLLPVLPEFEPVRFLVC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=106, Percent_Identity=38.6792452830189, Blast_Score=78, Evalue=2e-16,
Organism=Escherichia coli, GI1789639, Length=96, Percent_Identity=39.5833333333333, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI1787128, Length=112, Percent_Identity=37.5, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI87081978, Length=99, Percent_Identity=40.4040404040404, Blast_Score=73, Evalue=5e-15,
Organism=Escherichia coli, GI145693193, Length=114, Percent_Identity=34.2105263157895, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=108, Percent_Identity=37.962962962963, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1786448, Length=110, Percent_Identity=39.0909090909091, Blast_Score=64, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=108, Percent_Identity=35.1851851851852, Blast_Score=64, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 13511; Mature: 13511

Theoretical pI: Translated: 11.34; Mature: 11.34

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLNGIVAFVRTAETLSFVAAGRKLGVSASAIGKTIAKLERSLGVRLFHRTTRKVTLTD
CCCCHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
EGRHFHERCHRALEELRDAQAALSQSAQTPRGRLRVSLPVIGYRFLLPVLPEFEPVRFLV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCEEEEE
C
C
>Mature Secondary Structure
MDNLNGIVAFVRTAETLSFVAAGRKLGVSASAIGKTIAKLERSLGVRLFHRTTRKVTLTD
CCCCHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
EGRHFHERCHRALEELRDAQAALSQSAQTPRGRLRVSLPVIGYRFLLPVLPEFEPVRFLV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCEEEEE
C
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]