Click here to switch to the map view.

The map label for this gene is omp32 [H]

Identifier: 83720807

GI number: 83720807

Start: 2385219

End: 2386481

Strand: Reverse

Name: omp32 [H]

Synonym: BTH_I2113

Alternate gene names: 83720807

Gene position: 2386481-2385219 (Counterclockwise)

Preceding gene: 83719660

Following gene: 83718829

Centisome position: 62.65

GC content: 69.52

Gene sequence:

>1263_bases
GTGTCGACGCACTGCTGCGCCGCGTCATCGCCGCCGCCGCGCGTCGGCCGCCCGCGCGCGCCGCGGCGCGGCGGCCCTCG
GGATTCCCCGAGGGTTTCCCTCACCGTTCATCTGGACGGCTTTGCAGCGACTTTGCCGCTACCGACACTGCGCATGCCCC
TCGTCAAAAACAATGACCACCCGGTTTGGAGAAACGATGCGATGAAGACGACCAGGTTCAGGAATGCACGCCGACCGCGC
GCGCTCGCCGCAACCGCGACGCTCGCCGCGCTGTCCGGCCCGACTCACGCGCAGTCGACGCTCACGCTCTACGGCGTGAC
CGACGCGGGCGTGCAGTATCTGTCGCACGCCGACGGCCGACACGACGCCTGGCGATTGCAAAACTACGGAATCCTGCCTT
CCCAGATCGGCGTCAAGGGCGACGAGGATCTGGGCGGCGGCTGGCACGCGCTCTTCAAGCTCGAGCAAGGCGTCAACCTG
AACGACGGCGCGGCGAGCACGCCCGGCTACGCGTTCTTTCGCGGCGCGTACGTCGGCGTGGGCGGGCCCGCCGGCGCCGT
CACGCTCGGCCGCCAGTTCAGCACGCTGTTCGACAAGACGCTCTTCTACGATCCGCTCTGGTACGCGTCGTACAGCGGCC
AGGGCGTGCTCGTGCCGCTGTCCGCGAACTTCGTCGATCACTCGATCAAGTTCCAGTCGGCGACGTTCGCCGGCTTCGAC
GTCGAGGCGCTCGCCGCCACGGCCGGCATCGCGGGCAACGCACGCGCCGGCCGCGTGCTCGAGCTGGGCGGCCAGTTCAC
GAGCAACGGCCTGTCGGCGAGTGTCGTGCTGCATCGGTCGCACGGCGCGGTCGACGGCGGCGTCGATCGCGCCGCGCAAC
GGCGCGACCTCGGCACGGTTGCCGCGCGCTACACGTTCGCGTCGCTGCCGCTCACCGTCTACGCCGGCGTCGAGCGCCTG
ACGGGCGACCTCGACCCCGCGCGCACGATCGTCTGGGGCGGTGCGCGCTACCAGACGAGCGGCCGCTTCGGTTTTGCGGG
CGGCATCTATCGCACCGATTCGCCGACGCCGCAGATCGGTCACCCGACGCTCTTCATCGCGAGCGCCACCTGTTCGCTGT
CCAAGCGCACCGTCGCGTACCTGAACCTCGGCTACGCGAAAAACAGCGGCCGAAGCTCGCAGACCGTCTACGAGTATGAC
CCGACGCCGCTCGCCGGCGCATCGCAGTTCGGCGCGATGCTCGGCATGTACCACGTCTTCTGA

Upstream 100 bases:

>100_bases
GTGCGCGCTTCGATTGCTTCGTTGAGCGATCGATTATAGCCGTCGGCTTTTTTGAAAACCGCCCGTGCGAGAAAGCACGA
ATGCCCCATCCATTTGAACG

Downstream 100 bases:

>100_bases
ACCGAGCCAGAGAGATCACGACCATGGCCATCAAAACACTGCTGCAAGCGCCCGCGCCGCCGGGCGCGGCGCCGTCCGCC
GGCGCGCCCGATTTCACGAG

Product: porin

Products: NA

Alternate protein names: OMP32 [H]

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MSTHCCAASSPPPRVGRPRAPRRGGPRDSPRVSLTVHLDGFAATLPLPTLRMPLVKNNDHPVWRNDAMKTTRFRNARRPR
ALAATATLAALSGPTHAQSTLTLYGVTDAGVQYLSHADGRHDAWRLQNYGILPSQIGVKGDEDLGGGWHALFKLEQGVNL
NDGAASTPGYAFFRGAYVGVGGPAGAVTLGRQFSTLFDKTLFYDPLWYASYSGQGVLVPLSANFVDHSIKFQSATFAGFD
VEALAATAGIAGNARAGRVLELGGQFTSNGLSASVVLHRSHGAVDGGVDRAAQRRDLGTVAARYTFASLPLTVYAGVERL
TGDLDPARTIVWGGARYQTSGRFGFAGGIYRTDSPTPQIGHPTLFIASATCSLSKRTVAYLNLGYAKNSGRSSQTVYEYD
PTPLAGASQFGAMLGMYHVF

Sequences:

>Translated_420_residues
MSTHCCAASSPPPRVGRPRAPRRGGPRDSPRVSLTVHLDGFAATLPLPTLRMPLVKNNDHPVWRNDAMKTTRFRNARRPR
ALAATATLAALSGPTHAQSTLTLYGVTDAGVQYLSHADGRHDAWRLQNYGILPSQIGVKGDEDLGGGWHALFKLEQGVNL
NDGAASTPGYAFFRGAYVGVGGPAGAVTLGRQFSTLFDKTLFYDPLWYASYSGQGVLVPLSANFVDHSIKFQSATFAGFD
VEALAATAGIAGNARAGRVLELGGQFTSNGLSASVVLHRSHGAVDGGVDRAAQRRDLGTVAARYTFASLPLTVYAGVERL
TGDLDPARTIVWGGARYQTSGRFGFAGGIYRTDSPTPQIGHPTLFIASATCSLSKRTVAYLNLGYAKNSGRSSQTVYEYD
PTPLAGASQFGAMLGMYHVF
>Mature_419_residues
STHCCAASSPPPRVGRPRAPRRGGPRDSPRVSLTVHLDGFAATLPLPTLRMPLVKNNDHPVWRNDAMKTTRFRNARRPRA
LAATATLAALSGPTHAQSTLTLYGVTDAGVQYLSHADGRHDAWRLQNYGILPSQIGVKGDEDLGGGWHALFKLEQGVNLN
DGAASTPGYAFFRGAYVGVGGPAGAVTLGRQFSTLFDKTLFYDPLWYASYSGQGVLVPLSANFVDHSIKFQSATFAGFDV
EALAATAGIAGNARAGRVLELGGQFTSNGLSASVVLHRSHGAVDGGVDRAAQRRDLGTVAARYTFASLPLTVYAGVERLT
GDLDPARTIVWGGARYQTSGRFGFAGGIYRTDSPTPQIGHPTLFIASATCSLSKRTVAYLNLGYAKNSGRSSQTVYEYDP
TPLAGASQFGAMLGMYHVF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 44612; Mature: 44480

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTHCCAASSPPPRVGRPRAPRRGGPRDSPRVSLTVHLDGFAATLPLPTLRMPLVKNNDH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCEECCEEECCCC
PVWRNDAMKTTRFRNARRPRALAATATLAALSGPTHAQSTLTLYGVTDAGVQYLSHADGR
CCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHCCCCC
HDAWRLQNYGILPSQIGVKGDEDLGGGWHALFKLEQGVNLNDGAASTPGYAFFRGAYVGV
CCEEEECCCCCCHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEC
GGPAGAVTLGRQFSTLFDKTLFYDPLWYASYSGQGVLVPLSANFVDHSIKFQSATFAGFD
CCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCCEEEECCEEECCCC
VEALAATAGIAGNARAGRVLELGGQFTSNGLSASVVLHRSHGAVDGGVDRAAQRRDLGTV
HHHHHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
AARYTFASLPLTVYAGVERLTGDLDPARTIVWGGARYQTSGRFGFAGGIYRTDSPTPQIG
HHHEEHHCCCEEEECCHHHHCCCCCCCCEEEECCEEEECCCCEEECCCEEECCCCCCCCC
HPTLFIASATCSLSKRTVAYLNLGYAKNSGRSSQTVYEYDPTPLAGASQFGAMLGMYHVF
CCEEEEEEEECCCCCCEEEEEEECEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
STHCCAASSPPPRVGRPRAPRRGGPRDSPRVSLTVHLDGFAATLPLPTLRMPLVKNNDH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCEECCEEECCCC
PVWRNDAMKTTRFRNARRPRALAATATLAALSGPTHAQSTLTLYGVTDAGVQYLSHADGR
CCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHCCCCC
HDAWRLQNYGILPSQIGVKGDEDLGGGWHALFKLEQGVNLNDGAASTPGYAFFRGAYVGV
CCEEEECCCCCCHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEC
GGPAGAVTLGRQFSTLFDKTLFYDPLWYASYSGQGVLVPLSANFVDHSIKFQSATFAGFD
CCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCCEEEECCEEECCCC
VEALAATAGIAGNARAGRVLELGGQFTSNGLSASVVLHRSHGAVDGGVDRAAQRRDLGTV
HHHHHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
AARYTFASLPLTVYAGVERLTGDLDPARTIVWGGARYQTSGRFGFAGGIYRTDSPTPQIG
HHHEEHHCCCEEEECCHHHHCCCCCCCCEEEECCEEEECCCCEEECCCEEECCCCCCCCC
HPTLFIASATCSLSKRTVAYLNLGYAKNSGRSSQTVYEYDPTPLAGASQFGAMLGMYHVF
CCEEEEEEEECCCCCCEEEEEEECEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1848840 [H]