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The map label for this gene is yhjC [H]

Identifier: 83720634

GI number: 83720634

Start: 728287

End: 729261

Strand: Direct

Name: yhjC [H]

Synonym: BTH_I0632

Alternate gene names: 83720634

Gene position: 728287-729261 (Clockwise)

Preceding gene: 83721064

Following gene: 83721291

Centisome position: 19.12

GC content: 67.18

Gene sequence:

>975_bases
ATGGACCGCATTCAGGCAATGGAAGTCTTCACCCGCGTGGTGGAGGCGAACAGCTTCACGCGGGCCGCGGAGACGCTCGG
GATGCCGCGCGCGTCGGTGACGACGATCATCCAGAATCTCGAGGCGCTGCTCGGCGCGCGCCTGATGCACCGGACCACGC
GCCGGCTGTCTCTGACGCCGGAGGGCGCCGCGTACTACGAGCACTGCATCAAGATCATCACCGAGATCGCGGAGACGGAC
GCGAGCTTTCAGGTCGGCAAGCGCAAGCCGAGCGGCGCGCTGCGCGTGCACATGCCGAGCTCGCTCGGCCGGCGGCTCGT
GATTCCCGCGCTGCCGATCTTCCGCCAGCGCTACCCGGACGTCGTGCTCGATCTGGGGCTGTCCGATCGCCCCGTCGATC
CGGTCGAAGAGGGGATCGACTGCATGATCCGCATCGGGCCGCTCGAGGATTCCTCGATGGTCGCGCGGCGCATCGGGATG
CTCAAGCGCGTCACCTGCGCGTCGCCCGACTACCTGAAGCGCTTCGGCGAACCCATGGAGATCGCGGAACTGGCCGCGCA
TCATGCGGTGAATTTTCGCGCGAGCCACGGTTCGCGGCCGGTGCCTTGGGTGTTCGTGATCGACGGCAAGCCGGTCGAGG
TCAGGATGGAGGGCGGCGTGACCGTCAATGATTCGGATGCCTACGTGACATGCGGCGTCGAGGGTTTCGGGATGATCCAG
CCGACGCTCTTCATGGTGCTGCCGCACCTGCTCGACGGCACGCTGAAAGAGGTGCTGCCGGGCTTGAATCCGAAGCCGAA
GCCGATCTCGATCGTTTATCCGAACAACCGGCACCTGTCCGCGAAGGTCCGCGTGTTCGCAGACTGGATCGCCGAGCTGT
TCGATTCGACGCCCGCGCTCGAAGGCGGCGAAGACTGGCGCGGCGGCGTCGCGGCGCGCGAGAAGCCGGCGCGGCGCGGG
CAGGTCGCGGCATAG

Upstream 100 bases:

>100_bases
ACGCCGGACTATTCGGCGAAAGCGAATAGTCGCGAAGCGGCTTGAATCCGGGTACTCGCGTGCTTTATTCTGTCCTGTTG
GCGATTCGAAGGGGGACGGC

Downstream 100 bases:

>100_bases
CGGCGCGGGGCAGGCGGGCGGCGGACGCGTGCGGCACGCGTCGCCGCGGGCGTGTCGAACGCGTGTCGAATCGGGTAACG
CCGCCCGACGCCCGACGGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MDRIQAMEVFTRVVEANSFTRAAETLGMPRASVTTIIQNLEALLGARLMHRTTRRLSLTPEGAAYYEHCIKIITEIAETD
ASFQVGKRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPDVVLDLGLSDRPVDPVEEGIDCMIRIGPLEDSSMVARRIGM
LKRVTCASPDYLKRFGEPMEIAELAAHHAVNFRASHGSRPVPWVFVIDGKPVEVRMEGGVTVNDSDAYVTCGVEGFGMIQ
PTLFMVLPHLLDGTLKEVLPGLNPKPKPISIVYPNNRHLSAKVRVFADWIAELFDSTPALEGGEDWRGGVAAREKPARRG
QVAA

Sequences:

>Translated_324_residues
MDRIQAMEVFTRVVEANSFTRAAETLGMPRASVTTIIQNLEALLGARLMHRTTRRLSLTPEGAAYYEHCIKIITEIAETD
ASFQVGKRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPDVVLDLGLSDRPVDPVEEGIDCMIRIGPLEDSSMVARRIGM
LKRVTCASPDYLKRFGEPMEIAELAAHHAVNFRASHGSRPVPWVFVIDGKPVEVRMEGGVTVNDSDAYVTCGVEGFGMIQ
PTLFMVLPHLLDGTLKEVLPGLNPKPKPISIVYPNNRHLSAKVRVFADWIAELFDSTPALEGGEDWRGGVAAREKPARRG
QVAA
>Mature_324_residues
MDRIQAMEVFTRVVEANSFTRAAETLGMPRASVTTIIQNLEALLGARLMHRTTRRLSLTPEGAAYYEHCIKIITEIAETD
ASFQVGKRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPDVVLDLGLSDRPVDPVEEGIDCMIRIGPLEDSSMVARRIGM
LKRVTCASPDYLKRFGEPMEIAELAAHHAVNFRASHGSRPVPWVFVIDGKPVEVRMEGGVTVNDSDAYVTCGVEGFGMIQ
PTLFMVLPHLLDGTLKEVLPGLNPKPKPISIVYPNNRHLSAKVRVFADWIAELFDSTPALEGGEDWRGGVAAREKPARRG
QVAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=40.9556313993174, Blast_Score=224, Evalue=5e-60,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=32.6599326599327, Blast_Score=161, Evalue=7e-41,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=28.7162162162162, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=29.4736842105263, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=29.9295774647887, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=28.4246575342466, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=29.2096219931272, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789173, Length=143, Percent_Identity=32.8671328671329, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=22.4137931034483, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=21.3058419243986, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35728; Mature: 35728

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIQAMEVFTRVVEANSFTRAAETLGMPRASVTTIIQNLEALLGARLMHRTTRRLSLTP
CCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
EGAAYYEHCIKIITEIAETDASFQVGKRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPD
CCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCEEEEECCHHCCCEEECCCCHHHHHHCCC
VVLDLGLSDRPVDPVEEGIDCMIRIGPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPME
EEEECCCCCCCCCHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCHH
IAELAAHHAVNFRASHGSRPVPWVFVIDGKPVEVRMEGGVTVNDSDAYVTCGVEGFGMIQ
HHHHHHHHHHEEEECCCCCCCCEEEEECCCCEEEEECCCEEECCCCCEEEECCCCCCCHH
PTLFMVLPHLLDGTLKEVLPGLNPKPKPISIVYPNNRHLSAKVRVFADWIAELFDSTPAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCC
EGGEDWRGGVAAREKPARRGQVAA
CCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDRIQAMEVFTRVVEANSFTRAAETLGMPRASVTTIIQNLEALLGARLMHRTTRRLSLTP
CCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
EGAAYYEHCIKIITEIAETDASFQVGKRKPSGALRVHMPSSLGRRLVIPALPIFRQRYPD
CCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCEEEEECCHHCCCEEECCCCHHHHHHCCC
VVLDLGLSDRPVDPVEEGIDCMIRIGPLEDSSMVARRIGMLKRVTCASPDYLKRFGEPME
EEEECCCCCCCCCHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCHH
IAELAAHHAVNFRASHGSRPVPWVFVIDGKPVEVRMEGGVTVNDSDAYVTCGVEGFGMIQ
HHHHHHHHHHEEEECCCCCCCCEEEEECCCCEEEEECCCEEECCCCCEEEECCCCCCCHH
PTLFMVLPHLLDGTLKEVLPGLNPKPKPISIVYPNNRHLSAKVRVFADWIAELFDSTPAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCC
EGGEDWRGGVAAREKPARRGQVAA
CCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]