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The map label for this gene is ymdB [C]

Identifier: 83720630

GI number: 83720630

Start: 466863

End: 467396

Strand: Direct

Name: ymdB [C]

Synonym: BTH_I0421

Alternate gene names: 83720630

Gene position: 466863-467396 (Clockwise)

Preceding gene: 83721337

Following gene: 83719358

Centisome position: 12.26

GC content: 69.66

Gene sequence:

>534_bases
ATGCCGAACATCGGTTCGACGTCGGTCGAAGCGCGCGTCGTCGACATCACGACGCTCGCGCTCGATGCGATCGTCAATGC
GGCCAATGCGTCGCTGCTGGGCGGCGGCGGCGTCGACGGCGCGATCCACCGCGCGGCGGGGCCCGAGCTCGTGAAGGAAT
GCGCGACGCTCGGCGGCTGCGCGACGGGCGACGCGAAGCTCACGCGAGGCTATCGCTTGCCTGCGAAATACGTGATCCAC
ACGGTCGGCCCGGTCTGGCACGGCGGCAAGCGCGGCGAGGCCGAGCTGCTCGCGTCGTGCTACCGGCGCTCGCTCGAAGT
CGCGGCCGGCGCCGGCTGCACGTCGATCGCGTTTCCGGCGATCAGTTGCGGCGCGTATCGCTTTCCGCCAGGCGACGCGA
CCGCGATCGCGGTGCGTACCGTGACCGGCGCGCTCGCGGGCGAACTGGCCGATGCACGATTCGAGCGCGTCGTATTCGCG
TGCTTTTCCGACGAGATGCTCGATCTTTATCGCGCGGCGCTCGCGCGTGTTTGA

Upstream 100 bases:

>100_bases
CGGGCGCGCTGCGCGGCGCGCCCGCGTTCGCGCGTTCAGTGCGACCGGCGGCGCGTGAGCGTACGCTGTGCGCATCGCGA
TCAACTCGGTGGAGGGCATC

Downstream 100 bases:

>100_bases
GTGCGCGTCCGTTCAAGCCCCGCCTTCGAACCCCGCCTGCCGCCACGCCTCGAACACGACGACCGCGACCGTGTTCGACA
GATTGAGGCTGCGATTGCCG

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MPNIGSTSVEARVVDITTLALDAIVNAANASLLGGGGVDGAIHRAAGPELVKECATLGGCATGDAKLTRGYRLPAKYVIH
TVGPVWHGGKRGEAELLASCYRRSLEVAAGAGCTSIAFPAISCGAYRFPPGDATAIAVRTVTGALAGELADARFERVVFA
CFSDEMLDLYRAALARV

Sequences:

>Translated_177_residues
MPNIGSTSVEARVVDITTLALDAIVNAANASLLGGGGVDGAIHRAAGPELVKECATLGGCATGDAKLTRGYRLPAKYVIH
TVGPVWHGGKRGEAELLASCYRRSLEVAAGAGCTSIAFPAISCGAYRFPPGDATAIAVRTVTGALAGELADARFERVVFA
CFSDEMLDLYRAALARV
>Mature_176_residues
PNIGSTSVEARVVDITTLALDAIVNAANASLLGGGGVDGAIHRAAGPELVKECATLGGCATGDAKLTRGYRLPAKYVIHT
VGPVWHGGKRGEAELLASCYRRSLEVAAGAGCTSIAFPAISCGAYRFPPGDATAIAVRTVTGALAGELADARFERVVFAC
FSDEMLDLYRAALARV

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=161, Percent_Identity=52.1739130434783, Blast_Score=157, Evalue=6e-39,
Organism=Homo sapiens, GI13569840, Length=161, Percent_Identity=50.9316770186335, Blast_Score=147, Evalue=5e-36,
Organism=Homo sapiens, GI207450721, Length=165, Percent_Identity=40, Blast_Score=109, Evalue=1e-24,
Organism=Homo sapiens, GI8923143, Length=165, Percent_Identity=40, Blast_Score=109, Evalue=1e-24,
Organism=Homo sapiens, GI154813199, Length=132, Percent_Identity=36.3636363636364, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371718, Length=166, Percent_Identity=32.5301204819277, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371716, Length=166, Percent_Identity=32.5301204819277, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371714, Length=166, Percent_Identity=32.5301204819277, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371712, Length=166, Percent_Identity=32.5301204819277, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371710, Length=166, Percent_Identity=32.5301204819277, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371706, Length=166, Percent_Identity=32.5301204819277, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI20336746, Length=167, Percent_Identity=29.3413173652695, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI93141018, Length=173, Percent_Identity=26.0115606936416, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI93141020, Length=173, Percent_Identity=26.0115606936416, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI4758496, Length=173, Percent_Identity=26.0115606936416, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1787283, Length=166, Percent_Identity=50.6024096385542, Blast_Score=152, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17538214, Length=154, Percent_Identity=50, Blast_Score=126, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24586353, Length=129, Percent_Identity=40.3100775193798, Blast_Score=87, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18181; Mature: 18050

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNIGSTSVEARVVDITTLALDAIVNAANASLLGGGGVDGAIHRAAGPELVKECATLGGC
CCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEECCCCCCCHHHHCCCHHHHHHHHHHCCC
ATGDAKLTRGYRLPAKYVIHTVGPVWHGGKRGEAELLASCYRRSLEVAAGAGCTSIAFPA
CCCCHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ISCGAYRFPPGDATAIAVRTVTGALAGELADARFERVVFACFSDEMLDLYRAALARV
HCCCCEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PNIGSTSVEARVVDITTLALDAIVNAANASLLGGGGVDGAIHRAAGPELVKECATLGGC
CCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEECCCCCCCHHHHCCCHHHHHHHHHHCCC
ATGDAKLTRGYRLPAKYVIHTVGPVWHGGKRGEAELLASCYRRSLEVAAGAGCTSIAFPA
CCCCHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ISCGAYRFPPGDATAIAVRTVTGALAGELADARFERVVFACFSDEMLDLYRAALARV
HCCCCEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]