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The map label for this gene is ntrY [H]

Identifier: 83720407

GI number: 83720407

Start: 163683

End: 166046

Strand: Direct

Name: ntrY [H]

Synonym: BTH_I0134

Alternate gene names: 83720407

Gene position: 163683-166046 (Clockwise)

Preceding gene: 83720682

Following gene: 83718878

Centisome position: 4.3

GC content: 66.92

Gene sequence:

>2364_bases
GTGATCGTGTCGACTGTCGCGATCACGGCGCTTCTGCTGCTCGTGCTGCTCGCGGCCGCGAGCGCGAACACCGAGTTCTT
CGATCGCTACTACTCGTGGCTCTACTCGGCGAACATCATCGTCGCGCTCGTGTTCATGCTCGTCGTGCTCGGGCTCGTCG
GAATGATCGTCGCGCGGCTGAGAAAGGGCAAGTTCGGCACGCGGCTGCTCGCGAAGCTCGCGGTGTTCTTCACGCTCGTC
GGCGTCGTGCCGGGCGGGATCATCTATATCGTGTCGTATCAGTTCGTGTCGCGCAGCATCGAATCGTGGTTCGACGTGAA
CGTCGAGACGGCGCTTACCGCGGGCCTGAATCTCGGCCGCGGGATGCTCGACACGTCGCTCGCCGACTTGCAGACGAAGG
CGCGCCTGATGTCCGAGCAGCTCGCGAGCGCCGACACCAACACGAACGGCACGACGCTCACGCTGCTGCGGCTGCGCGAC
CAGTTCGGCGTGCAGGACGCGACGATCGTCGAGCCGGACCGCGGCACCGGCGCGTCGCCCGATGTGCACATCGTCGCGCA
GGCATCGGGCAACTTCGCCGCGCTGATTCCGGACGACATGCCGACGCCGCTGATGCTGAGCCAGGCGCGCGAGCACGGCG
CATTCGCGGCGATCGAGGGCGAAGTCGACGGCGACCCGCGCGCGCGCGGGTCGAAGGGGGCGCTGCGCTTGCGCGTCGTG
CAGCGCATTCCCGATTCGTCGACGTCGCTGTTGCAGCCCGCCGAGCGTTTCCTGCAGCTCACGCAGCCGGTGTCGCCGAC
GCTCGCGCGCAACGCCGACGCCGTGCAGCGCGCGTATCGCGAATATCAGGAGAAGGCGCTCGGCCGCAGCGGGCTGCGCA
AGATGTACATCGGCACGCTCACGCTCGCGCTGTTTCTCGCGACGTTCATCGCGATGATGATCGCGCTCGCGCTCGGCAAT
CAGCTCGCGCGGCCGCTCTTCCTGCTCGCGCAGGGCACGAAGGAAGTCGCGGAGGGCGACTACACGCCCAAGCGCGAGAT
CAAGACGCGCGACGAGCTCGGCTTCCTCACGCAGTCGTTCAACGCGATGACGCGGCAGTTGTCGGAGGCGCGCCTCGCGG
TCGAGAAGAATCGCGTCGCGCTCGAACATTCGAAGACGTATCTCGAGAGCATTCTCGCGAACCTGACGGCGGGCGTGTTC
GTGCTCGACCGCCAGTTCCGCCTGACGACCGCGAATCGCGGCGCCGAGCGGATCTTCCGCCAGCCGTTCAATTCGCTGAT
CGGCACGACGCTCGATCAGATCGGCGTCGTCGCGGAATTCGGCGCGATGGTGAGAAAGGCGTTCGCCGATCGCGAGGCGG
CGGGCCAGGGCAGCGGCGAGGATCGCGGCCACTGGCAGCAGCAGTTCGCGGTCGAGGTGCCGGGCGAGGCCGATCCGCTG
ACGCTGCTCGTGCGCGGCACGCGGCTCGTGTCGACGGCGGCTGCGCCCGGGCAGCCCGACGATCCGCAGACGTCCGGCTA
CGTCGTCGTGTTCGACGACATCTCCGACGTGATCTCCGCGCAGCGTTCGGTCGCGTGGGGCGAAGTGGCGCGGCGGCTTG
CGCACGAGATCAAGAATCCGCTCACGCCGATCCAGCTGTCGGCCGAGCGGCTGCAGATGAAGCTCTCCGACAAGCTCTCG
CAGCCCGACGCCGACGTGCTCAAGCGCGGCGCGACGACGATCGTCAATCAGGTCGCCGCGATGAAGCGCATGGTCGATGA
TTTCCGCGATTACGCGCGCACGCCGCCCGCGGTGCTCGTCAACCTGCAACTGAACGATCTGGTGAGCGAAGTATTGACGC
TATACGGCGTCGGCGAGGGCAAGAGCACGATCGTCGTCGAGCAGGCGCCGCTTCCGGTGATCCGCGGCGATGCGACGCAG
CTGCGCCAGGTGATCCACAATCTGCTGCAGAACGCGCAGGATTCGGTTGCCGACGTCGAGCATCCCCGTGTGTTGCTCGA
AACCAAGACAGTAGAATATGGCGATCCCGACGCGAACGGCAAAACGCGCGTCGCGGTTCGGTTGACCGTCTCGGACAACG
GTCCCGGTTTTCCGGCGCGCATCCTGACGCGCGCGTTCGAGCCTTACGTGACGACGAAGGCGAAGGGTACGGGGCTCGGC
CTCGCGACCGTGAAGAAGATCGTCGACGAGCACGGCGCGCGGATCGACCTGCGCAATCGCATGCGCGGCGACGTCGTGGA
AGGCGCGCAGGTCTCGATCCTGTTCCTGCAACTCGCGGACGATGCGGCGGGCGCCGGGGGCGGAACGAACGGCGGCACGG
CACCCGCCAAGACAAGAGCAACTGTGCAGACAAAGGCAGCGTAA

Upstream 100 bases:

>100_bases
CTCGTTTCCGACTGGAAGCGTTTCACTTTCACGGTGGCCGAGCGTGCTAAGTAAAATGCGCGTCCGCCGCGCAACGAGCG
GAAAGAGCCTTCTGATACGC

Downstream 100 bases:

>100_bases
ATGGCAACCATCCTGGTGGTAGATGATGAAATGGGCATCCGGGAATTGCTCTCGGAGATCCTCAGCGACGAAGGGCACGT
CGTCGACGTCGCGGAGAACG

Product: nitrogen regulation protein NtrY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 787; Mature: 787

Protein sequence:

>787_residues
MIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYSANIIVALVFMLVVLGLVGMIVARLRKGKFGTRLLAKLAVFFTLV
GVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDTSLADLQTKARLMSEQLASADTNTNGTTLTLLRLRD
QFGVQDATIVEPDRGTGASPDVHIVAQASGNFAALIPDDMPTPLMLSQAREHGAFAAIEGEVDGDPRARGSKGALRLRVV
QRIPDSSTSLLQPAERFLQLTQPVSPTLARNADAVQRAYREYQEKALGRSGLRKMYIGTLTLALFLATFIAMMIALALGN
QLARPLFLLAQGTKEVAEGDYTPKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRVALEHSKTYLESILANLTAGVF
VLDRQFRLTTANRGAERIFRQPFNSLIGTTLDQIGVVAEFGAMVRKAFADREAAGQGSGEDRGHWQQQFAVEVPGEADPL
TLLVRGTRLVSTAAAPGQPDDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPIQLSAERLQMKLSDKLS
QPDADVLKRGATTIVNQVAAMKRMVDDFRDYARTPPAVLVNLQLNDLVSEVLTLYGVGEGKSTIVVEQAPLPVIRGDATQ
LRQVIHNLLQNAQDSVADVEHPRVLLETKTVEYGDPDANGKTRVAVRLTVSDNGPGFPARILTRAFEPYVTTKAKGTGLG
LATVKKIVDEHGARIDLRNRMRGDVVEGAQVSILFLQLADDAAGAGGGTNGGTAPAKTRATVQTKAA

Sequences:

>Translated_787_residues
MIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYSANIIVALVFMLVVLGLVGMIVARLRKGKFGTRLLAKLAVFFTLV
GVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDTSLADLQTKARLMSEQLASADTNTNGTTLTLLRLRD
QFGVQDATIVEPDRGTGASPDVHIVAQASGNFAALIPDDMPTPLMLSQAREHGAFAAIEGEVDGDPRARGSKGALRLRVV
QRIPDSSTSLLQPAERFLQLTQPVSPTLARNADAVQRAYREYQEKALGRSGLRKMYIGTLTLALFLATFIAMMIALALGN
QLARPLFLLAQGTKEVAEGDYTPKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRVALEHSKTYLESILANLTAGVF
VLDRQFRLTTANRGAERIFRQPFNSLIGTTLDQIGVVAEFGAMVRKAFADREAAGQGSGEDRGHWQQQFAVEVPGEADPL
TLLVRGTRLVSTAAAPGQPDDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPIQLSAERLQMKLSDKLS
QPDADVLKRGATTIVNQVAAMKRMVDDFRDYARTPPAVLVNLQLNDLVSEVLTLYGVGEGKSTIVVEQAPLPVIRGDATQ
LRQVIHNLLQNAQDSVADVEHPRVLLETKTVEYGDPDANGKTRVAVRLTVSDNGPGFPARILTRAFEPYVTTKAKGTGLG
LATVKKIVDEHGARIDLRNRMRGDVVEGAQVSILFLQLADDAAGAGGGTNGGTAPAKTRATVQTKAA
>Mature_787_residues
MIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYSANIIVALVFMLVVLGLVGMIVARLRKGKFGTRLLAKLAVFFTLV
GVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGRGMLDTSLADLQTKARLMSEQLASADTNTNGTTLTLLRLRD
QFGVQDATIVEPDRGTGASPDVHIVAQASGNFAALIPDDMPTPLMLSQAREHGAFAAIEGEVDGDPRARGSKGALRLRVV
QRIPDSSTSLLQPAERFLQLTQPVSPTLARNADAVQRAYREYQEKALGRSGLRKMYIGTLTLALFLATFIAMMIALALGN
QLARPLFLLAQGTKEVAEGDYTPKREIKTRDELGFLTQSFNAMTRQLSEARLAVEKNRVALEHSKTYLESILANLTAGVF
VLDRQFRLTTANRGAERIFRQPFNSLIGTTLDQIGVVAEFGAMVRKAFADREAAGQGSGEDRGHWQQQFAVEVPGEADPL
TLLVRGTRLVSTAAAPGQPDDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPIQLSAERLQMKLSDKLS
QPDADVLKRGATTIVNQVAAMKRMVDDFRDYARTPPAVLVNLQLNDLVSEVLTLYGVGEGKSTIVVEQAPLPVIRGDATQ
LRQVIHNLLQNAQDSVADVEHPRVLLETKTVEYGDPDANGKTRVAVRLTVSDNGPGFPARILTRAFEPYVTTKAKGTGLG
LATVKKIVDEHGARIDLRNRMRGDVVEGAQVSILFLQLADDAAGAGGGTNGGTAPAKTRATVQTKAA

Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]

COG id: COG5000

COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=405, Percent_Identity=25.679012345679, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1790300, Length=361, Percent_Identity=24.6537396121884, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1790436, Length=220, Percent_Identity=29.5454545454545, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR017232 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 85113; Mature: 85113

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYSANIIVALVFMLVVLGLVGMIVARL
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKGKFGTRLLAKLAVFFTLVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGR
HCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
GMLDTSLADLQTKARLMSEQLASADTNTNGTTLTLLRLRDQFGVQDATIVEPDRGTGASP
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCCCCEEECCCCCCCCCC
DVHIVAQASGNFAALIPDDMPTPLMLSQAREHGAFAAIEGEVDGDPRARGSKGALRLRVV
CEEEEEECCCCEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHH
QRIPDSSTSLLQPAERFLQLTQPVSPTLARNADAVQRAYREYQEKALGRSGLRKMYIGTL
HHCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLALFLATFIAMMIALALGNQLARPLFLLAQGTKEVAEGDYTPKREIKTRDELGFLTQSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHCCCHHHHHHHHHHH
NAMTRQLSEARLAVEKNRVALEHSKTYLESILANLTAGVFVLDRQFRLTTANRGAERIFR
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEECCCHHHHHHH
QPFNSLIGTTLDQIGVVAEFGAMVRKAFADREAAGQGSGEDRGHWQQQFAVEVPGEADPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEEECCCCCCCE
TLLVRGTRLVSTAAAPGQPDDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNP
EEEEECCHHHEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LTPIQLSAERLQMKLSDKLSQPDADVLKRGATTIVNQVAAMKRMVDDFRDYARTPPAVLV
CCCCEECHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
NLQLNDLVSEVLTLYGVGEGKSTIVVEQAPLPVIRGDATQLRQVIHNLLQNAQDSVADVE
EEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCC
HPRVLLETKTVEYGDPDANGKTRVAVRLTVSDNGPGFPARILTRAFEPYVTTKAKGTGLG
CCEEEEEECEEECCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCH
LATVKKIVDEHGARIDLRNRMRGDVVEGAQVSILFLQLADDAAGAGGGTNGGTAPAKTRA
HHHHHHHHHHCCCEEEHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
TVQTKAA
CEEECCC
>Mature Secondary Structure
MIVSTVAITALLLLVLLAAASANTEFFDRYYSWLYSANIIVALVFMLVVLGLVGMIVARL
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKGKFGTRLLAKLAVFFTLVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTAGLNLGR
HCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
GMLDTSLADLQTKARLMSEQLASADTNTNGTTLTLLRLRDQFGVQDATIVEPDRGTGASP
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCCCCEEECCCCCCCCCC
DVHIVAQASGNFAALIPDDMPTPLMLSQAREHGAFAAIEGEVDGDPRARGSKGALRLRVV
CEEEEEECCCCEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHH
QRIPDSSTSLLQPAERFLQLTQPVSPTLARNADAVQRAYREYQEKALGRSGLRKMYIGTL
HHCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLALFLATFIAMMIALALGNQLARPLFLLAQGTKEVAEGDYTPKREIKTRDELGFLTQSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHCCCHHHHHHHHHHH
NAMTRQLSEARLAVEKNRVALEHSKTYLESILANLTAGVFVLDRQFRLTTANRGAERIFR
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEECCCHHHHHHH
QPFNSLIGTTLDQIGVVAEFGAMVRKAFADREAAGQGSGEDRGHWQQQFAVEVPGEADPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEEECCCCCCCE
TLLVRGTRLVSTAAAPGQPDDPQTSGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNP
EEEEECCHHHEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LTPIQLSAERLQMKLSDKLSQPDADVLKRGATTIVNQVAAMKRMVDDFRDYARTPPAVLV
CCCCEECHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
NLQLNDLVSEVLTLYGVGEGKSTIVVEQAPLPVIRGDATQLRQVIHNLLQNAQDSVADVE
EEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCC
HPRVLLETKTVEYGDPDANGKTRVAVRLTVSDNGPGFPARILTRAFEPYVTTKAKGTGLG
CCEEEEEECEEECCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCH
LATVKKIVDEHGARIDLRNRMRGDVVEGAQVSILFLQLADDAAGAGGGTNGGTAPAKTRA
HHHHHHHHHHCCCEEEHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
TVQTKAA
CEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]