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The map label for this gene is cydA [H]

Identifier: 83720310

GI number: 83720310

Start: 505354

End: 506949

Strand: Reverse

Name: cydA [H]

Synonym: BTH_I0454

Alternate gene names: 83720310

Gene position: 506949-505354 (Counterclockwise)

Preceding gene: 83721213

Following gene: 83719224

Centisome position: 13.31

GC content: 63.72

Gene sequence:

>1596_bases
ATGATAAGTAGCGAAGTCGTCGATCTGTCGCGTCTGCAGTTCGGCATCACAGCGCTCTACCATTTCCTGTTTGTTCCGCT
CACGCTCGGCATGTCCTGGCTGCTCGTCATCATGGAAGCCGTCTACGTGATGACGGGCAAGCAGGTCTACAAGGACATGA
CCCAGTTCTGGGGCAAGCTCTTCGGAATCAACTTCGCGATGGGCGTGACGACGGGCATCACGCTCGAATTCCAGTTCGGC
ACGAACTGGTCGTACTACTCGCACTACGTCGGCGACATCTTCGGCGTGCCGCTCGCCGTCGAGGGGCTGATGGCGTTCTT
CCTGGAATCGACGTTCGTCGGCCTGTTCTTCTTCGGCTGGAACCGTCTGACGAAGGTGCAGCACTTGATCGTCACGTTCC
TCGTCGCGCTCGGCTCGAACCTGTCCGCGCTGTGGATCCTCGTCGCGAACGGCTGGATGAACAATCCGGTCGGCGCCGAG
TTCAACTACCAGACGATGCGCATGGAGCTCTCGAACCTGTTCGACGTGCTCTTCAACCCGGTCGCTCAGGTGAAGTTCGT
GCACACGGTGTCGGCGGGCTACGTGACGGCGTCGATGTTCGTGCTCGGCGTGTCCGCATGGTACCTGCTGAAAAAGCGCG
ACACCGACTTCGCGCTGCGCTCGTTCGCGGTCGCCGCGGGCTTCGGCCTCGCGTCGACGCTCTGCGTGATCGTGCTCGGC
GACGAATCGGGCTACACGACGGGCGAGGTGCAGAAGATGAAGCTCGCCGCGATCGAATCCGAATGGGAAACGCAGCCCGC
GCCCGCGTCGTTCACGCTGATCGGCCTGCCGAACCAGGCCGAGGAACGCACCGATTACGCGATCAAGATCCCGTACGCGC
TCGGCCTCATCGCGACGCGCTCGATCAGCGAGCCGGTGATCGGCCTGCGTGAGCTCGCGAAGCGCAGCGAAGCGCACATC
CAGAGCGGGATGATCGCGTACGGCGCGCTGCAGAAGCTGAAGGCGGGCGACACGAGCGCCGAGACGAAGGCAACGTTCGA
TCAGCACAAGCAGTATCTCGGCTACGGCCTGATGCTCAAGCAGTTCACGCAGAACGTGACCGACGCGACGCCGGATCAGA
TCAAGGCCGCGGCGAAGCAGACGATCCCGCCTGTCGCGCCCGTGTTCTTCTCGTTCCGGATCATGGTGTTCCTCGGCTTC
CTGTTCCTCGCGACCTTCATCGCCGCGTTCTGGTTGTGCGCGCGCCGTCAGTTGCTGCAGGACAACCGCCGCTGGTTCCT
GCGCTACGCGGTGTGGGCGATTCCGCTGCCGTGGCTCGCCGCCGAGTTCGGCTGGGTCGTCGCCGAAGTGGGCCGCCAGC
CGTGGACGATCGCGGGCATCCTGCCGACGCACCTGTCCGCGTCGAGCCTCACGGCGACCGATCTGTACCTGAGCCTCGCG
GGCTTCATCGTGTTCTACACGGCGCTGTTCATCATCGAGATCACGCTGATGTTCAAGTACGCGCGGCTCGGCCCGTCGTC
GCTGCACACCGGCCGCTATCACCACGAACAGGCGGGGAGGCCGCTCGAGAAGACCGTCGCCGGCACCGTCGCGTGA

Upstream 100 bases:

>100_bases
TTCAACCATCCGCAGGCGGAGCACATGTCGTTGCCGCCTGCCGTCGTCGCCGCGCAGCTGCTGTCGACGACGCCATCCGC
ACCCACTCAGGGAGACCGCC

Downstream 100 bases:

>100_bases
CGCCCCCGGCACCCTCGAATTCGCACAAGGAATCGCCATGGACTATGCAACTCTGAAAGTGATCTGGTGGCTGCTCGTCG
GGATACTGCTCATCGGCTTC

Product: cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLTKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAE
FNYQTMRMELSNLFDVLFNPVAQVKFVHTVSAGYVTASMFVLGVSAWYLLKKRDTDFALRSFAVAAGFGLASTLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQAEERTDYAIKIPYALGLIATRSISEPVIGLRELAKRSEAHI
QSGMIAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLKQFTQNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGF
LFLATFIAAFWLCARRQLLQDNRRWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTATDLYLSLA
GFIVFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAGRPLEKTVAGTVA

Sequences:

>Translated_531_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLTKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAE
FNYQTMRMELSNLFDVLFNPVAQVKFVHTVSAGYVTASMFVLGVSAWYLLKKRDTDFALRSFAVAAGFGLASTLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQAEERTDYAIKIPYALGLIATRSISEPVIGLRELAKRSEAHI
QSGMIAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLKQFTQNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGF
LFLATFIAAFWLCARRQLLQDNRRWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTATDLYLSLA
GFIVFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAGRPLEKTVAGTVA
>Mature_531_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLTKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAE
FNYQTMRMELSNLFDVLFNPVAQVKFVHTVSAGYVTASMFVLGVSAWYLLKKRDTDFALRSFAVAAGFGLASTLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQAEERTDYAIKIPYALGLIATRSISEPVIGLRELAKRSEAHI
QSGMIAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLKQFTQNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGF
LFLATFIAAFWLCARRQLLQDNRRWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTATDLYLSLA
GFIVFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAGRPLEKTVAGTVA

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=514, Percent_Identity=64.7859922178988, Blast_Score=709, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=514, Percent_Identity=53.6964980544747, Blast_Score=564, Evalue=1e-162,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 59153; Mature: 59153

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLTKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMELSNLFDVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
VAQVKFVHTVSAGYVTASMFVLGVSAWYLLKKRDTDFALRSFAVAAGFGLASTLCVIVLG
HHHEEEEHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHCCCHHHEEEEEEEE
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQAEERTDYAIKIPYALGLIATR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEECCHHHHHHHHC
SISEPVIGLRELAKRSEAHIQSGMIAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLK
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
QFTQNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGFLFLATFIAAFWLCARRQLLQ
HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNRRWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTATDLYLSLA
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEECHHCCCCCCCHHHHHHHHHH
GFIVFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAGRPLEKTVAGTVA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHCCCCC
>Mature Secondary Structure
MISSEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLTKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMELSNLFDVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
VAQVKFVHTVSAGYVTASMFVLGVSAWYLLKKRDTDFALRSFAVAAGFGLASTLCVIVLG
HHHEEEEHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHCCCHHHEEEEEEEE
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQAEERTDYAIKIPYALGLIATR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEECCHHHHHHHHC
SISEPVIGLRELAKRSEAHIQSGMIAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLK
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
QFTQNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGFLFLATFIAAFWLCARRQLLQ
HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNRRWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTATDLYLSLA
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEECHHCCCCCCCHHHHHHHHHH
GFIVFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAGRPLEKTVAGTVA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]