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The map label for this gene is ychF [H]

Identifier: 83720307

GI number: 83720307

Start: 3356450

End: 3357544

Strand: Direct

Name: ychF [H]

Synonym: BTH_I2920

Alternate gene names: 83720307

Gene position: 3356450-3357544 (Clockwise)

Preceding gene: 83721026

Following gene: 83720508

Centisome position: 88.11

GC content: 64.47

Gene sequence:

>1095_bases
ATGAGCCTCAAATGCGGCATCGTCGGCTTGCCCAACGTCGGCAAGTCCACCCTGTTCAACGCGCTGACGAAGGCCGGCAT
CGCCGCCGAGAACTATCCGTTTTGCACGATCGAGCCGAACGTCGGCGTTGTCGAGGTGCCTGACGCGCGCCTGAAGGCGC
TCGCCGACATCATCAAACCCGAGCGCGTCGTGCCGGCCGTCGTCGAGTTCGTCGACATCGCGGGCCTCGTCGCCGGCGCG
AGCAAGGGCGAGGGCCTCGGCAACCAGTTCCTCGCGAACATCCGCGAAACCGACGCGATCACGCACGTCGTGCGCTGCTT
CGAGGACGAGAACGTCATCCACGTCGCCGGCAAGGTGAGCCCGCTCGACGACATCGAAGTCATCAACACCGAACTCGCGC
TCGCCGACCTCGGCACCGTCGAGAAAGCGCTCGCCCGCTATTCGAAGGCGGCGAAGTCGGGCAACGACAAGGAAGCGGCG
AAGCTCGTCGCGGTGCTCGAAAAGACGCGCGCGCACCTCGATCAGGGCAAGGCCGTGCGCGGCCTCGACCTGTCCGACGA
CGAAAAGGCGCTCCTCAAGCCGTTCTGCCTGATCACCGCGAAGCCCGCGATGTACGTCGCGAACGTGAAGGAAGACGGCT
TCGAGAACAATCCGCACCTCGACGCGGTGCGCAAGTACGCGGAAAGCGAGAAATCGCCGGTCGTCGCGGTGTGCGCGGCA
ATCGAGGCGGAGATCGCCGACCTCGACGACGCAGACAAAGAAGCGTTCCTCGCCGACATGGGCATGGACGAGCCGGGCCT
CGACCGCGTGATCCGCGCGGGCTTCAAGCTGCTCGGACTGCAGACGTACTTCACCGCAGGCGTGAAGGAAGTGCGCGCGT
GGACGATTCACATCGGCGACACCGCGCCGCAAGCGGCGGGCGTGATTCACACGGATTTCGAGCGCGGCTTCATTCGCGCG
CAGACGATCGCCTACGAGGATTTCATCGCGTACAAGGGTGAGCAAGGCGCGAAGGAGGCGGGCAAGATGCGTGCGGAAGG
CAAGGAATATGTCGTGCACGACGGCGACGTGATGAACTTCCTGTTCAACGTCTGA

Upstream 100 bases:

>100_bases
TCCTGCCCGGCCCGGTGCGGTTCGCGATAGCGCGCGGACGAGCGCGCCGGGCCCGAAGCGCCCCACATCACGCACAACCC
ATTGAATCCCGAAGGAACCC

Downstream 100 bases:

>100_bases
GCGTTTCGCGACGGCGCTCGCCGCGCGCCGCAGCATGCTTGCAAGGCCCGCGCAATGCGGACCTTTGTTTTGGATCATCG
CCGGCGCGCAACCGTCGCCG

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGVVEVPDARLKALADIIKPERVVPAVVEFVDIAGLVAGA
SKGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKVSPLDDIEVINTELALADLGTVEKALARYSKAAKSGNDKEAA
KLVAVLEKTRAHLDQGKAVRGLDLSDDEKALLKPFCLITAKPAMYVANVKEDGFENNPHLDAVRKYAESEKSPVVAVCAA
IEAEIADLDDADKEAFLADMGMDEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGDTAPQAAGVIHTDFERGFIRA
QTIAYEDFIAYKGEQGAKEAGKMRAEGKEYVVHDGDVMNFLFNV

Sequences:

>Translated_364_residues
MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGVVEVPDARLKALADIIKPERVVPAVVEFVDIAGLVAGA
SKGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKVSPLDDIEVINTELALADLGTVEKALARYSKAAKSGNDKEAA
KLVAVLEKTRAHLDQGKAVRGLDLSDDEKALLKPFCLITAKPAMYVANVKEDGFENNPHLDAVRKYAESEKSPVVAVCAA
IEAEIADLDDADKEAFLADMGMDEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGDTAPQAAGVIHTDFERGFIRA
QTIAYEDFIAYKGEQGAKEAGKMRAEGKEYVVHDGDVMNFLFNV
>Mature_363_residues
SLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGVVEVPDARLKALADIIKPERVVPAVVEFVDIAGLVAGAS
KGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKVSPLDDIEVINTELALADLGTVEKALARYSKAAKSGNDKEAAK
LVAVLEKTRAHLDQGKAVRGLDLSDDEKALLKPFCLITAKPAMYVANVKEDGFENNPHLDAVRKYAESEKSPVVAVCAAI
EAEIADLDDADKEAFLADMGMDEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGDTAPQAAGVIHTDFERGFIRAQ
TIAYEDFIAYKGEQGAKEAGKMRAEGKEYVVHDGDVMNFLFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=43.0894308943089, Blast_Score=298, Evalue=4e-81,
Organism=Homo sapiens, GI58761502, Length=225, Percent_Identity=36.8888888888889, Blast_Score=147, Evalue=2e-35,
Organism=Escherichia coli, GI1787454, Length=364, Percent_Identity=70.8791208791209, Blast_Score=535, Evalue=1e-153,
Organism=Escherichia coli, GI1789574, Length=127, Percent_Identity=29.1338582677165, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17509631, Length=366, Percent_Identity=40.7103825136612, Blast_Score=286, Evalue=2e-77,
Organism=Saccharomyces cerevisiae, GI6319499, Length=370, Percent_Identity=40, Blast_Score=249, Evalue=4e-67,
Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=35.0923482849604, Blast_Score=200, Evalue=3e-52,
Organism=Saccharomyces cerevisiae, GI6321649, Length=166, Percent_Identity=39.1566265060241, Blast_Score=91, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24640873, Length=367, Percent_Identity=41.41689373297, Blast_Score=287, Evalue=7e-78,
Organism=Drosophila melanogaster, GI24640877, Length=367, Percent_Identity=41.41689373297, Blast_Score=287, Evalue=7e-78,
Organism=Drosophila melanogaster, GI24640875, Length=367, Percent_Identity=41.41689373297, Blast_Score=287, Evalue=7e-78,
Organism=Drosophila melanogaster, GI24640879, Length=325, Percent_Identity=38.7692307692308, Blast_Score=228, Evalue=4e-60,
Organism=Drosophila melanogaster, GI24585318, Length=144, Percent_Identity=31.9444444444444, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 39157; Mature: 39026

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGVVEVPDARLKALADIIKP
CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCC
ERVVPAVVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKVS
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PLDDIEVINTELALADLGTVEKALARYSKAAKSGNDKEAAKLVAVLEKTRAHLDQGKAVR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
GLDLSDDEKALLKPFCLITAKPAMYVANVKEDGFENNPHLDAVRKYAESEKSPVVAVCAA
CCCCCCCCHHHHCCHHEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEHHH
IEAEIADLDDADKEAFLADMGMDEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGD
HHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECC
TAPQAAGVIHTDFERGFIRAQTIAYEDFIAYKGEQGAKEAGKMRAEGKEYVVHDGDVMNF
CCCCCCCCEEECHHCCEEEHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEECCHHHHH
LFNV
HHCC
>Mature Secondary Structure 
SLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGVVEVPDARLKALADIIKP
CCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCC
ERVVPAVVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKVS
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PLDDIEVINTELALADLGTVEKALARYSKAAKSGNDKEAAKLVAVLEKTRAHLDQGKAVR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
GLDLSDDEKALLKPFCLITAKPAMYVANVKEDGFENNPHLDAVRKYAESEKSPVVAVCAA
CCCCCCCCHHHHCCHHEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEHHH
IEAEIADLDDADKEAFLADMGMDEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGD
HHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECC
TAPQAAGVIHTDFERGFIRAQTIAYEDFIAYKGEQGAKEAGKMRAEGKEYVVHDGDVMNF
CCCCCCCCEEECHHCCEEEHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEECCHHHHH
LFNV
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]