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The map label for this gene is ydcN [C]

Identifier: 83720248

GI number: 83720248

Start: 918827

End: 919501

Strand: Direct

Name: ydcN [C]

Synonym: BTH_I0805

Alternate gene names: 83720248

Gene position: 918827-919501 (Clockwise)

Preceding gene: 83720720

Following gene: 83718827

Centisome position: 24.12

GC content: 62.22

Gene sequence:

>675_bases
GTGAACGAATGTGCGATGTGTGCGATGCGGCGCTGCGCCGCACGCAAAACACAAGGTCGATTATATGACACGAAGTGTCA
TGAGATACAATCTGTTTTTCAAAAGACATTCGCCGTCATGACGATTCGCCTGAAGCTGCTGAGGAAGCAGAAGGGATGGA
CGCTCGACGTGCTGGCCGAAGCGGCCGGTCTCACGAAGAGCTATTTGTCGAAGGTCGAGCGCGGCCTCAGCGTGCCGTCG
ATCGCGGTTGCGCTGAAGCTGTCGAAGGCGCTGCAGGTCGACGTCGAGCAACTGTTCTCGGAGAGCCGGGACCGCGAATT
GATCACGGTCACGCGGGCGGCGCAGCGCGCGCCGATGGGCAGCGCGGCGAGTGCGCGCACGTACGAGAGCATCGCGGCGG
GCGTCGCGCCGAAGAAGCTGTTGCCGTTCGTCGTGCATCCACCGCGCGATTACGTGAGCTCGGCGTTTCGCGAGCACGAA
GGCGAGGAGATGCTGTTCGTCCACAAGGGGAGTGTCGAGATCGAGTTCCCGAACGAGACGATCAAGCTGAAGACGGGCGA
TTCGGTGTATTTCAACGCGTTGATTCCGCACCGGATGCGCAGCGTCGGCGTGACGCAGGCGGAAGTGCTCGTCGTCGTGA
GCGACGACGAGGGCGTGCACGACGGCGCGCGGTAG

Upstream 100 bases:

>100_bases
CATCCGCTGTCCTTGATTTCGTTGTCGAGCCGCCGCTGCGCGAGCGCGACGAGCTCGGCCTTGCCCATCTTCAATGTGTC
GACCATGCAGCCTCCAAGTC

Downstream 100 bases:

>100_bases
CGGCTGTGGGCGCGTCCGCGCAAGCGGCGGTCAATCGGGAGGAGAAAGGCGATGCGCGACGGGCGGGGGGCGTCCGGCGG
CGCGTGGCACGGAGGATGGA

Product: DNA-binding protein

Products: NA

Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; MerR Family Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Regulatory Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator HTH_3 Family; Cupin 2 Barrel Domain-Containing Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Cro/CI Family; Transcriptional Regulator Protein; HTH-Type Transcriptional Regulator; Cupin 2 Conserved Barrel Domain-Containing Protein; Helix-Turn-Helix Family; Transcriptional Regulatory Protein; Epoxidase; Transcriptional Regulator XRE Family Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcription Regulator Protein; Transcriptional Regulator Xre Family; Transcriptional Regulator XRE; Transcription Regulator; XRE Family-Like Protein; HTH_3family Transcriptional Regulator

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MNECAMCAMRRCAARKTQGRLYDTKCHEIQSVFQKTFAVMTIRLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPS
IAVALKLSKALQVDVEQLFSESRDRELITVTRAAQRAPMGSAASARTYESIAAGVAPKKLLPFVVHPPRDYVSSAFREHE
GEEMLFVHKGSVEIEFPNETIKLKTGDSVYFNALIPHRMRSVGVTQAEVLVVVSDDEGVHDGAR

Sequences:

>Translated_224_residues
MNECAMCAMRRCAARKTQGRLYDTKCHEIQSVFQKTFAVMTIRLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPS
IAVALKLSKALQVDVEQLFSESRDRELITVTRAAQRAPMGSAASARTYESIAAGVAPKKLLPFVVHPPRDYVSSAFREHE
GEEMLFVHKGSVEIEFPNETIKLKTGDSVYFNALIPHRMRSVGVTQAEVLVVVSDDEGVHDGAR
>Mature_224_residues
MNECAMCAMRRCAARKTQGRLYDTKCHEIQSVFQKTFAVMTIRLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPS
IAVALKLSKALQVDVEQLFSESRDRELITVTRAAQRAPMGSAASARTYESIAAGVAPKKLLPFVVHPPRDYVSSAFREHE
GEEMLFVHKGSVEIEFPNETIKLKTGDSVYFNALIPHRMRSVGVTQAEVLVVVSDDEGVHDGAR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24837; Mature: 24837

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNECAMCAMRRCAARKTQGRLYDTKCHEIQSVFQKTFAVMTIRLKLLRKQKGWTLDVLAE
CCHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSESRDRELITVTRAAQRAPMG
HHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCC
SAASARTYESIAAGVAPKKLLPFVVHPPRDYVSSAFREHEGEEMLFVHKGSVEIEFPNET
CCCHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHHHHCCCCEEEEEECCEEEEEECCCE
IKLKTGDSVYFNALIPHRMRSVGVTQAEVLVVVSDDEGVHDGAR
EEEECCCCEEEEHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MNECAMCAMRRCAARKTQGRLYDTKCHEIQSVFQKTFAVMTIRLKLLRKQKGWTLDVLAE
CCHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSESRDRELITVTRAAQRAPMG
HHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCC
SAASARTYESIAAGVAPKKLLPFVVHPPRDYVSSAFREHEGEEMLFVHKGSVEIEFPNET
CCCHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHHHHCCCCEEEEEECCEEEEEECCCE
IKLKTGDSVYFNALIPHRMRSVGVTQAEVLVVVSDDEGVHDGAR
EEEECCCCEEEEHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA