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The map label for this gene is ycfH [C]

Identifier: 83720220

GI number: 83720220

Start: 2435048

End: 2435857

Strand: Direct

Name: ycfH [C]

Synonym: BTH_I2157

Alternate gene names: 83720220

Gene position: 2435048-2435857 (Clockwise)

Preceding gene: 83721488

Following gene: 83720945

Centisome position: 63.93

GC content: 67.41

Gene sequence:

>810_bases
ATGTACGTCGATTCACACTGTCACATCAATTTCGAAGGGCTCGCCGACCGTCTGCCGCAAGTGCTGGACAACATGCGCGA
GCACGGCGTCACGCACGCGCTCTGCGTGTCGGTCGATCTCGAGACGCTGCCCGCCGTGCTCGCCATCGCGCGCGATCACG
ACAACGTTTTCGCGTCGGTCGGCGTGCATCCGGACCACGAGGACGCGAAGGAGCCGACGGTGGCCGAGCTCATCGAGCTC
GCCGCGCATCCGAAGGTCGTCGCGATCGGCGAGACGGGCCTCGACTACTACCGGCTCGATGGCCGCTCGATCGCCGACAT
GGAATGGCAGCGCGAGCGCTTTCGCACGCACATCCGCGCCGCGCACGCGACGGGCAAGCCGCTCATCGTCCACACGCGGG
CGTCGTCGCAGGACACGCTGCGGATCATGGCCGAGGAGCGCGCGAGCGTGCCGGGCGGCGTGATGCACTGCTTCACCGAG
CCCTGGCCTGTCGCCGAGGCGGCGCTCGCGCAGAACTTCCACATCTCGCTTTCCGGCATCGTCACGTTCAAGAGCGCGAC
CGACGTGCAGGACGTCGCGCGGCGCGTGCCGCTTGACCGGCTGCTGATCGAAACCGATTCGCCGTACCTCGCGCCCGTGC
CGTATCGCGGCAAGCCGAATGAACCTGCGTACGTCAGCCATGTCGGACGTTTTATCGCGGCGCAACGCGGGATGCCCGAC
GAGGCGCTCGGCGCCGCGACGTCGCAGAACTTTTTCCGGCTGTTCAAGATCGCCCGCACGGGCGACGCCAGCCCAGTCAA
CCAGGGGTAG

Upstream 100 bases:

>100_bases
CGTGATCGTCGGCAAGCGGCTCGCCGACGCATAGGCGCGCACGGCGCGGCGAGCGGGCGCGTCGGCCCGCCGGCGCACGC
AGCGCAGCAAGGAATTCAAC

Downstream 100 bases:

>100_bases
GAGCTGAAAAAATGAAGTCGATCAAGCACTTGTCGAAACAACGCACGATGGGCGCCGTGCTGCGCACGCTCGCGGTGGCG
GGTGGGCTCGGCGCGCTCGC

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MYVDSHCHINFEGLADRLPQVLDNMREHGVTHALCVSVDLETLPAVLAIARDHDNVFASVGVHPDHEDAKEPTVAELIEL
AAHPKVVAIGETGLDYYRLDGRSIADMEWQRERFRTHIRAAHATGKPLIVHTRASSQDTLRIMAEERASVPGGVMHCFTE
PWPVAEAALAQNFHISLSGIVTFKSATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIAAQRGMPD
EALGAATSQNFFRLFKIARTGDASPVNQG

Sequences:

>Translated_269_residues
MYVDSHCHINFEGLADRLPQVLDNMREHGVTHALCVSVDLETLPAVLAIARDHDNVFASVGVHPDHEDAKEPTVAELIEL
AAHPKVVAIGETGLDYYRLDGRSIADMEWQRERFRTHIRAAHATGKPLIVHTRASSQDTLRIMAEERASVPGGVMHCFTE
PWPVAEAALAQNFHISLSGIVTFKSATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIAAQRGMPD
EALGAATSQNFFRLFKIARTGDASPVNQG
>Mature_269_residues
MYVDSHCHINFEGLADRLPQVLDNMREHGVTHALCVSVDLETLPAVLAIARDHDNVFASVGVHPDHEDAKEPTVAELIEL
AAHPKVVAIGETGLDYYRLDGRSIADMEWQRERFRTHIRAAHATGKPLIVHTRASSQDTLRIMAEERASVPGGVMHCFTE
PWPVAEAALAQNFHISLSGIVTFKSATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIAAQRGMPD
EALGAATSQNFFRLFKIARTGDASPVNQG

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=276, Percent_Identity=27.8985507246377, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI14042943, Length=203, Percent_Identity=29.064039408867, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI225903439, Length=180, Percent_Identity=29.4444444444444, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=25.4681647940075, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=25.4681647940075, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI226061853, Length=268, Percent_Identity=25, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI226061614, Length=262, Percent_Identity=24.0458015267176, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787342, Length=262, Percent_Identity=45.8015267175573, Blast_Score=201, Evalue=6e-53,
Organism=Escherichia coli, GI48994985, Length=236, Percent_Identity=33.0508474576271, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI87082439, Length=261, Percent_Identity=27.9693486590038, Blast_Score=106, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17559024, Length=230, Percent_Identity=29.1304347826087, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17543026, Length=300, Percent_Identity=26.6666666666667, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17565396, Length=305, Percent_Identity=25.9016393442623, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=24.1509433962264, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24648690, Length=290, Percent_Identity=26.551724137931, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221330018, Length=270, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24586117, Length=270, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 29612; Mature: 29612

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVDSHCHINFEGLADRLPQVLDNMREHGVTHALCVSVDLETLPAVLAIARDHDNVFASV
CEECCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHCCCCCEEEEE
GVHPDHEDAKEPTVAELIELAAHPKVVAIGETGLDYYRLDGRSIADMEWQRERFRTHIRA
CCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEECCCEECCHHHHHHHHHHHHHH
AHATGKPLIVHTRASSQDTLRIMAEERASVPGGVMHCFTEPWPVAEAALAQNFHISLSGI
HCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHCCCEEEEEEE
VTFKSATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIAAQRGMPD
EEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCH
EALGAATSQNFFRLFKIARTGDASPVNQG
HHHCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MYVDSHCHINFEGLADRLPQVLDNMREHGVTHALCVSVDLETLPAVLAIARDHDNVFASV
CEECCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHCCCCCEEEEE
GVHPDHEDAKEPTVAELIELAAHPKVVAIGETGLDYYRLDGRSIADMEWQRERFRTHIRA
CCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEECCCEECCHHHHHHHHHHHHHH
AHATGKPLIVHTRASSQDTLRIMAEERASVPGGVMHCFTEPWPVAEAALAQNFHISLSGI
HCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHCCCEEEEEEE
VTFKSATDVQDVARRVPLDRLLIETDSPYLAPVPYRGKPNEPAYVSHVGRFIAAQRGMPD
EEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCH
EALGAATSQNFFRLFKIARTGDASPVNQG
HHHCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]