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The map label for this gene is yiaD [H]

Identifier: 83720098

GI number: 83720098

Start: 975393

End: 976178

Strand: Reverse

Name: yiaD [H]

Synonym: BTH_I0857

Alternate gene names: 83720098

Gene position: 976178-975393 (Counterclockwise)

Preceding gene: 83721583

Following gene: 284159400

Centisome position: 25.63

GC content: 69.08

Gene sequence:

>786_bases
ATGAAGACGGCCCCGGCACCTGACGCCGGACGGATCGAGGCGCTCGCGCGCCTGCATGATCGTCGGCGCGCGGGTCGCCC
CCGCCGAAAGAGCAGTTCTTTTTTGTTCTTGTCGAGTCACTCAAGAGAGGAAACCAAGATGAATACCAAAATCGCGACGC
GCTTGTCCGTTTTCGCTCTCGCCGGCGCCCTGCTGGCGGGTTGCGCAACCCAGCAAGGCACGAACACGGCGGTCGGCACC
GGCACGGGCGCCGCACTCGGCGCGGGCATCGGCGCGCTGGCTGGCGGCGGCAAGGGCGCGGCGATCGGCGCCGGCGTCGG
CGCGCTCGTCGGCGGCGTGACGGGTTACAACTGGCAAGCGATCAAGAACAAGCTCGCGCCGTCGGCGCAGCAGACGGGCA
CGCAGGTCACCGAGCAGCCGGACGGCTCGCTCAAGCTGAACGTGCCGAGCTCGGTCACGTTCGCGACCGACCAGTACGCG
GTCACGCCGGCCTTCACGCCGCTCCTGAACGACCTCGCGACGACGCTGAACCAGAACCCGCAGATCACCGCATCGGTCGT
CGGCTACACCGACAGCACGGGCTCGGCCGCGCACAACCAGACGCTGTCGCAGAATCGCGCGCAAAGCGTCGTGAACGCGC
TCGCGCAACGCGGCGTCGCGGCAACCCGCCTGTCGGCGCAAGGCATGGGCGCGTCGAACCCGATCGCCGACAACGCGACG
GAAGCCGGCCGCGCGCAAAACCGCCGCGTCGAGATCTACCTGCGCGCACCGCAAGCCGCGCAGTAA

Upstream 100 bases:

>100_bases
GGCGCGCCTCGGGGCCACATCGGTGGCCACACCGCCTATATTGTAGAGGCTGGGGCGCGCCCGGTCCGAACAGCCATCCT
GGCGAACGGGGCTTGTCGCA

Downstream 100 bases:

>100_bases
ATCCGACCCACTCGGAGAATGGCGCGCCGAGCCCCGCCGGACAAGGCATTCGAGGCAGCTTGTAACAACTCGAAAAAATT
TTCGAACTTCTTGCGAGCGG

Product: ompA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MKTAPAPDAGRIEALARLHDRRRAGRPRRKSSSFLFLSSHSREETKMNTKIATRLSVFALAGALLAGCATQQGTNTAVGT
GTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLAPSAQQTGTQVTEQPDGSLKLNVPSSVTFATDQYA
VTPAFTPLLNDLATTLNQNPQITASVVGYTDSTGSAAHNQTLSQNRAQSVVNALAQRGVAATRLSAQGMGASNPIADNAT
EAGRAQNRRVEIYLRAPQAAQ

Sequences:

>Translated_261_residues
MKTAPAPDAGRIEALARLHDRRRAGRPRRKSSSFLFLSSHSREETKMNTKIATRLSVFALAGALLAGCATQQGTNTAVGT
GTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLAPSAQQTGTQVTEQPDGSLKLNVPSSVTFATDQYA
VTPAFTPLLNDLATTLNQNPQITASVVGYTDSTGSAAHNQTLSQNRAQSVVNALAQRGVAATRLSAQGMGASNPIADNAT
EAGRAQNRRVEIYLRAPQAAQ
>Mature_261_residues
MKTAPAPDAGRIEALARLHDRRRAGRPRRKSSSFLFLSSHSREETKMNTKIATRLSVFALAGALLAGCATQQGTNTAVGT
GTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLAPSAQQTGTQVTEQPDGSLKLNVPSSVTFATDQYA
VTPAFTPLLNDLATTLNQNPQITASVVGYTDSTGSAAHNQTLSQNRAQSVVNALAQRGVAATRLSAQGMGASNPIADNAT
EAGRAQNRRVEIYLRAPQAAQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=206, Percent_Identity=42.7184466019417, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787191, Length=121, Percent_Identity=38.0165289256198, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788957, Length=117, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 26635; Mature: 26635

Theoretical pI: Translated: 11.16; Mature: 11.16

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTAPAPDAGRIEALARLHDRRRAGRPRRKSSSFLFLSSHSREETKMNTKIATRLSVFAL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
AGALLAGCATQQGTNTAVGTGTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQA
HHHHHHHHHCCCCCCCCCCCCCCHHHHHCHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHH
IKNKLAPSAQQTGTQVTEQPDGSLKLNVPSSVTFATDQYAVTPAFTPLLNDLATTLNQNP
HHHHCCCCHHHHCCCCCCCCCCCEEEECCCCEEEECCCEEECHHHHHHHHHHHHHHCCCC
QITASVVGYTDSTGSAAHNQTLSQNRAQSVVNALAQRGVAATRLSAQGMGASNPIADNAT
CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCH
EAGRAQNRRVEIYLRAPQAAQ
HHCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MKTAPAPDAGRIEALARLHDRRRAGRPRRKSSSFLFLSSHSREETKMNTKIATRLSVFAL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
AGALLAGCATQQGTNTAVGTGTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQA
HHHHHHHHHCCCCCCCCCCCCCCHHHHHCHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHH
IKNKLAPSAQQTGTQVTEQPDGSLKLNVPSSVTFATDQYAVTPAFTPLLNDLATTLNQNP
HHHHCCCCHHHHCCCCCCCCCCCEEEECCCCEEEECCCEEECHHHHHHHHHHHHHHCCCC
QITASVVGYTDSTGSAAHNQTLSQNRAQSVVNALAQRGVAATRLSAQGMGASNPIADNAT
CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCH
EAGRAQNRRVEIYLRAPQAAQ
HHCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]