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The map label for this gene is yodF [H]

Identifier: 83720082

GI number: 83720082

Start: 1085683

End: 1087233

Strand: Direct

Name: yodF [H]

Synonym: BTH_I0960

Alternate gene names: 83720082

Gene position: 1085683-1087233 (Clockwise)

Preceding gene: 83721044

Following gene: 83721477

Centisome position: 28.5

GC content: 66.15

Gene sequence:

>1551_bases
ATGAACCTGACCGCGACCTTCGTCTTCGTGCTGTTCTTCGTCGGCGTGACGATCATGGGCTTTCTCGCCGCGAACTGGCG
GCGCGGCGACCTCGCGCATCTCGACGAATGGGGCCTCGGCGGCCGGCGCTTCGGCACGATCGTCACATGGTTCCTGCTCG
GCGGCGACCTCTATACCGCGTACACGTTCGTCGCCGTGCCGGCGCTCGTGTTCGGCGCGGGCGCGATGGGCTTCTTCGCG
CTGCCTTACACGATCCTCATCTATCCGTTCGCATTCGTCGTGTTCCCGAAGCTCTGGAGCATCGCGAAGCGTCACGGCTA
CGTGACGGCCGCCGACTTCGTCGGCGCGCGCTATGGCAGCCGCTCGCTCGCGCTCGCCGTCGCGGTGACGGGCATCGTCG
CGACGATGCCGTACATCGCGCTGCAGCTCGTCGGCATCGAAGTGGTGATCGGCGGGCTCGGCTTCGACACCCAGGGCTTC
GTCGGCGACCTGCCGCTCATCATCGCGTTCGCGATCCTCGCCGCGTACACGTACACGTCGGGGCTGCGCGCGCCCGCGAT
GATCGCGATCGTCAAGGACATCCTGATCTACATCACGATCGCCGCGGCGGTGATCGTGATTCCGGCGAAGCTCGGCGGCT
TCGGGCACATCTTCGGCGCGGTGCCGAGCGCGAAGCTGCTGCTGAAGGCGCCCGACGCAGCGAGCCTGAACGGCTTCAGC
GCATACACGACGCTCGCGATCGGCTCGGCGCTCGCGCTGTTCCTGTATCCGCATTCGGTGACGGCGATCCTGTCGTCGTC
GTCGGGCAACACGATCCGCCGCAACATGGCGATGCTGCCCGCGTACTCGTTCGTGCTCGGCCTGCTCGCGCTGCTCGGCT
ACATGGCGCTCGCGTCGGGCGTGAAGGATATGCCGGAATACGCGCCGTACTTCAAGGCGTTCGGCCCGAATTTCGCGGTG
CCGGCGTTGTTCCTGCACTTTTTCCCGTCGTGGTTCGTCGGCGTCGCGTTCGCCGCGATCGGGATCGGCGCGCTCGTGCC
GGCGGCGATCATGTCGATCGCCGCCGCGAACCTGTACACGCGCAACATCCATCGCGAGTTCGTCAATCGCAACATGACGC
ACGATCAGGAAACGCACGTCGCGAAGCTCGTGTCGCTGATCGTGAAGGTCGGCGCGGTCGCGTTCATTCTCGGGTTGCCG
CTCACCTACGCGATCCAGTTGCAGTTGCTCGGCGGGATCTGGATCATCCAGACGCTGCCCGCCATCGTGCTCGGCCTCTA
TACGCGCGTGCTCGACTATCGCGGGCTGCTGATCGGCTGGGCGGCGGGGCTCGTCTGCGGCACGTGGATGGCGATCTCGC
TGAAGCTCGCGAGTTCGATCTTCACGATCCATCTGTTCGGCCATGCGGTTCCGGGCTACGCGGCCGTCTGGGCGCTGGCC
GTGAATCTCGTCGTGTCGATCGCCGTCAGCGCGCTCGTTCGCATGCTCGGGATCGCGCATGCGGAGGACCGCACGCGGCC
GGAGGACTATCTCGACGTCGTCGAGAGCTGA

Upstream 100 bases:

>100_bases
GGTATCAACTGCTGTGGGTGTTCGTTAGCGCCGTGATCACGGCCTTCGTCTACCAGAAGACGAAGAACTGCTGGAAGAGC
GCTCCGCGGGGAGACGGCAA

Downstream 100 bases:

>100_bases
CGCGCGGTTTCGCGTCGGTCTGACGCGCAAGTGAAAACGCCCGCGGCGCGCATCGCGCCGCGGGCGTCGTGCGTCGGCCG
GCCGAGCGCCGACCCGAACG

Product: sodium:solute symporter family protein

Products: Na (I) [Cytoplasm]; pantothenate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MNLTATFVFVLFFVGVTIMGFLAANWRRGDLAHLDEWGLGGRRFGTIVTWFLLGGDLYTAYTFVAVPALVFGAGAMGFFA
LPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVGARYGSRSLALAVAVTGIVATMPYIALQLVGIEVVIGGLGFDTQGF
VGDLPLIIAFAILAAYTYTSGLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFGAVPSAKLLLKAPDAASLNGFS
AYTTLAIGSALALFLYPHSVTAILSSSSGNTIRRNMAMLPAYSFVLGLLALLGYMALASGVKDMPEYAPYFKAFGPNFAV
PALFLHFFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYTRNIHREFVNRNMTHDQETHVAKLVSLIVKVGAVAFILGLP
LTYAIQLQLLGGIWIIQTLPAIVLGLYTRVLDYRGLLIGWAAGLVCGTWMAISLKLASSIFTIHLFGHAVPGYAAVWALA
VNLVVSIAVSALVRMLGIAHAEDRTRPEDYLDVVES

Sequences:

>Translated_516_residues
MNLTATFVFVLFFVGVTIMGFLAANWRRGDLAHLDEWGLGGRRFGTIVTWFLLGGDLYTAYTFVAVPALVFGAGAMGFFA
LPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVGARYGSRSLALAVAVTGIVATMPYIALQLVGIEVVIGGLGFDTQGF
VGDLPLIIAFAILAAYTYTSGLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFGAVPSAKLLLKAPDAASLNGFS
AYTTLAIGSALALFLYPHSVTAILSSSSGNTIRRNMAMLPAYSFVLGLLALLGYMALASGVKDMPEYAPYFKAFGPNFAV
PALFLHFFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYTRNIHREFVNRNMTHDQETHVAKLVSLIVKVGAVAFILGLP
LTYAIQLQLLGGIWIIQTLPAIVLGLYTRVLDYRGLLIGWAAGLVCGTWMAISLKLASSIFTIHLFGHAVPGYAAVWALA
VNLVVSIAVSALVRMLGIAHAEDRTRPEDYLDVVES
>Mature_516_residues
MNLTATFVFVLFFVGVTIMGFLAANWRRGDLAHLDEWGLGGRRFGTIVTWFLLGGDLYTAYTFVAVPALVFGAGAMGFFA
LPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVGARYGSRSLALAVAVTGIVATMPYIALQLVGIEVVIGGLGFDTQGF
VGDLPLIIAFAILAAYTYTSGLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFGAVPSAKLLLKAPDAASLNGFS
AYTTLAIGSALALFLYPHSVTAILSSSSGNTIRRNMAMLPAYSFVLGLLALLGYMALASGVKDMPEYAPYFKAFGPNFAV
PALFLHFFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYTRNIHREFVNRNMTHDQETHVAKLVSLIVKVGAVAFILGLP
LTYAIQLQLLGGIWIIQTLPAIVLGLYTRVLDYRGLLIGWAAGLVCGTWMAISLKLASSIFTIHLFGHAVPGYAAVWALA
VNLVVSIAVSALVRMLGIAHAEDRTRPEDYLDVVES

Specific function: Catalyzes The Sodium-Dependent Uptake Of Extracellular Pantothenate. [C]

COG id: COG0591

COG function: function code ER; Na+/proline symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 55061; Mature: 55061

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLTATFVFVLFFVGVTIMGFLAANWRRGDLAHLDEWGLGGRRFGTIVTWFLLGGDLYTA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCHHHHH
YTFVAVPALVFGAGAMGFFALPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVGARYGS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHCCCC
RSLALAVAVTGIVATMPYIALQLVGIEVVIGGLGFDTQGFVGDLPLIIAFAILAAYTYTS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHC
GLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFGAVPSAKLLLKAPDAASLNGFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEECCCCCCCCCHH
AYTTLAIGSALALFLYPHSVTAILSSSSGNTIRRNMAMLPAYSFVLGLLALLGYMALASG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKDMPEYAPYFKAFGPNFAVPALFLHFFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYT
HHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIHREFVNRNMTHDQETHVAKLVSLIVKVGAVAFILGLPLTYAIQLQLLGGIWIIQTLP
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AIVLGLYTRVLDYRGLLIGWAAGLVCGTWMAISLKLASSIFTIHLFGHAVPGYAAVWALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VNLVVSIAVSALVRMLGIAHAEDRTRPEDYLDVVES
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MNLTATFVFVLFFVGVTIMGFLAANWRRGDLAHLDEWGLGGRRFGTIVTWFLLGGDLYTA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCHHHHH
YTFVAVPALVFGAGAMGFFALPYTILIYPFAFVVFPKLWSIAKRHGYVTAADFVGARYGS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHCCCC
RSLALAVAVTGIVATMPYIALQLVGIEVVIGGLGFDTQGFVGDLPLIIAFAILAAYTYTS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHC
GLRAPAMIAIVKDILIYITIAAAVIVIPAKLGGFGHIFGAVPSAKLLLKAPDAASLNGFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEECCCCCCCCCHH
AYTTLAIGSALALFLYPHSVTAILSSSSGNTIRRNMAMLPAYSFVLGLLALLGYMALASG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKDMPEYAPYFKAFGPNFAVPALFLHFFPSWFVGVAFAAIGIGALVPAAIMSIAAANLYT
HHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIHREFVNRNMTHDQETHVAKLVSLIVKVGAVAFILGLPLTYAIQLQLLGGIWIIQTLP
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AIVLGLYTRVLDYRGLLIGWAAGLVCGTWMAISLKLASSIFTIHLFGHAVPGYAAVWALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VNLVVSIAVSALVRMLGIAHAEDRTRPEDYLDVVES
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; pantothenate [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + pantothenate [Periplasm] = Na (I) [Cytoplasm] + pantothenate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]