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The map label for this gene is ycgR1 [H]

Identifier: 83720028

GI number: 83720028

Start: 281837

End: 282595

Strand: Direct

Name: ycgR1 [H]

Synonym: BTH_I0249

Alternate gene names: 83720028

Gene position: 281837-282595 (Clockwise)

Preceding gene: 83719486

Following gene: 83720978

Centisome position: 7.4

GC content: 67.19

Gene sequence:

>759_bases
ATGAATACCGAACAGTCGACGAGTCCGCCCGCGAACGCCGCCGCGCATTCCGGCCACGATTACGGCCGCCGCAATCCGCT
CGAGATCGGCGTGCAGTTGCGCAACCTCGTCAATCGCGGCGATTTCCTGACCGTCCAGTATCAGGGCGGCCAACTCGTCA
CCCGCATCCTCGACGTCGACGTCGGCGCGCGGACCTTCGTATTCGACTGGGGCGCGCTTGCCGACCAGAACGCGGGCATC
CTCGCCGCGCAGCGCTGCGTGTTCCATGCGTCGCCGGACGGCGTGCGCGTCGAATTCTCGACCGCGACCCCGCGCGAAAC
CCGTTACGAGAACCTGCCGGCGTTCGAGGCCGACTTTCCCGATGTGCTGTACTGCGTGCAGCGCCGCGAATATTTCCGGG
TCGACGCGCCGATCCTCGATCCGTACGTGTGCCGAGGCAAGCTGCCCGACGGCGAGAGCTTCCTGTTCGAGGTGCACAAC
CTGTCGCTCGGCGGCCTGGGGCTGCGCACGGGCGACGATCGCGTGGCGTCGTTCGAGCCGGGGATGACGCTGCCCGACGT
GGAGCTGAACCTGAACGGCCACGGGATGCTGTCGCTCGACCTGCAGCTCGTGTCGCACCGCGCAACCGAGACGCCGAGCG
GTGCGCGCCGCTACCAGTTGGGCTTTCGCTTCCTGTCGCTGCCGGGCAATGCCGAGAATACGTTGCAGCGCATCATCACG
CAGCTCGAGATGAAGCGCCGGCAACTCGCGCGCGCCTGA

Upstream 100 bases:

>100_bases
TGCCGCTAAACGTGAGAGACCAGCGATCGGGCGGATCACGCCCGGTCATAACGCGCCCCCGAAATCCGCCAGGCGCATAG
AGATAAAATACCGGCAAGCC

Downstream 100 bases:

>100_bases
CGAAACGCGCGGCGCGCGGCCGGCGAACCCGCTCGGGGCGGCAGAAACGCATGCGGCGGCGCTCGCGCGCAGGCCGCACG
CCGCGGCACGCATTTTTGCG

Product: YcgR protein superfamily protein

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR 1 [H]

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MNTEQSTSPPANAAAHSGHDYGRRNPLEIGVQLRNLVNRGDFLTVQYQGGQLVTRILDVDVGARTFVFDWGALADQNAGI
LAAQRCVFHASPDGVRVEFSTATPRETRYENLPAFEADFPDVLYCVQRREYFRVDAPILDPYVCRGKLPDGESFLFEVHN
LSLGGLGLRTGDDRVASFEPGMTLPDVELNLNGHGMLSLDLQLVSHRATETPSGARRYQLGFRFLSLPGNAENTLQRIIT
QLEMKRRQLARA

Sequences:

>Translated_252_residues
MNTEQSTSPPANAAAHSGHDYGRRNPLEIGVQLRNLVNRGDFLTVQYQGGQLVTRILDVDVGARTFVFDWGALADQNAGI
LAAQRCVFHASPDGVRVEFSTATPRETRYENLPAFEADFPDVLYCVQRREYFRVDAPILDPYVCRGKLPDGESFLFEVHN
LSLGGLGLRTGDDRVASFEPGMTLPDVELNLNGHGMLSLDLQLVSHRATETPSGARRYQLGFRFLSLPGNAENTLQRIIT
QLEMKRRQLARA
>Mature_252_residues
MNTEQSTSPPANAAAHSGHDYGRRNPLEIGVQLRNLVNRGDFLTVQYQGGQLVTRILDVDVGARTFVFDWGALADQNAGI
LAAQRCVFHASPDGVRVEFSTATPRETRYENLPAFEADFPDVLYCVQRREYFRVDAPILDPYVCRGKLPDGESFLFEVHN
LSLGGLGLRTGDDRVASFEPGMTLPDVELNLNGHGMLSLDLQLVSHRATETPSGARRYQLGFRFLSLPGNAENTLQRIIT
QLEMKRRQLARA

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility [H]

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

Organism=Escherichia coli, GI1787443, Length=240, Percent_Identity=33.75, Blast_Score=144, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 28032; Mature: 28032

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEQSTSPPANAAAHSGHDYGRRNPLEIGVQLRNLVNRGDFLTVQYQGGQLVTRILDVD
CCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHCC
VGARTFVFDWGALADQNAGILAAQRCVFHASPDGVRVEFSTATPRETRYENLPAFEADFP
CCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHCCCCCCCCCCH
DVLYCVQRREYFRVDAPILDPYVCRGKLPDGESFLFEVHNLSLGGLGLRTGDDRVASFEP
HHHHHHHHHHEEEECCCCCCCHHHCCCCCCCCEEEEEEECCCCCCEEECCCCCCEEECCC
GMTLPDVELNLNGHGMLSLDLQLVSHRATETPSGARRYQLGFRFLSLPGNAENTLQRIIT
CCCCCCEEEECCCCEEEEEEHEEHHCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHH
QLEMKRRQLARA
HHHHHHHHHHCC
>Mature Secondary Structure
MNTEQSTSPPANAAAHSGHDYGRRNPLEIGVQLRNLVNRGDFLTVQYQGGQLVTRILDVD
CCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHCC
VGARTFVFDWGALADQNAGILAAQRCVFHASPDGVRVEFSTATPRETRYENLPAFEADFP
CCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHCCCCCCCCCCH
DVLYCVQRREYFRVDAPILDPYVCRGKLPDGESFLFEVHNLSLGGLGLRTGDDRVASFEP
HHHHHHHHHHEEEECCCCCCCHHHCCCCCCCCEEEEEEECCCCCCEEECCCCCCEEECCC
GMTLPDVELNLNGHGMLSLDLQLVSHRATETPSGARRYQLGFRFLSLPGNAENTLQRIIT
CCCCCCEEEECCCCEEEEEEHEEHHCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHH
QLEMKRRQLARA
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA