| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is 83720002
Identifier: 83720002
GI number: 83720002
Start: 722822
End: 724762
Strand: Reverse
Name: 83720002
Synonym: BTH_I0628
Alternate gene names: NA
Gene position: 724762-722822 (Counterclockwise)
Preceding gene: 83720014
Following gene: 83720873
Centisome position: 19.03
GC content: 70.53
Gene sequence:
>1941_bases ATGCCGGACATGCCGCCGCGAACCGTCGCCCGCGCGATGCCGCCCGCCGCGGCGCGCACGCGAAGCGCGGATGACCGCGC GCCGCACGACCGCGCCAACCGGCTTCCCCGGGACCGTCTCTTTCCGATGAACGACCTCCTTCCCTACTACGAACGCGAGA TCGCGATGCTGCGGCACTCGATGCGCGAATTCGCGATCCGCCATCCGAAGATCGCGACGCGCTTCGGCATCGCCGATGGG CAGACCGACGACATGCACGTCGAGCGCATGCTCCAGTCGTTCGCGCTCCTCGGCGCGCAGATCGGCGAGGCGCTCGACGA CGAGTATCCGGAGTTCACCGAGGCGCTCGTCGAAACCGCGTGTCCCGACTATCTGCGCCCGTTTCCCGCATGCTCGATCG CGCAGTTCGACGCGGCTTCGCTGTTCAGCCAGTTGACGGAGGGCGTGACGATCGGGCGCGGCACCATGCTGGAAAGCCGC ATCGGCGCGAATCGGTTCCGCACCGCATACGACGTCGCGCTCGCGCCCGTGTCGATCGTCGACGCGCGCTTTCGCCCGGC GTCGGCCGCGCCGCCCGCCGCGCGGATGCCGCCGTCGTCGACGGGCATCGTGTCGATCACGTTCGATGCGCTGACCGCGA AGCCGACGCTCGCGGCGCTGCGCGCGCGCGGCCTGCGCGCGCATCTGCACGGCGACGCGCCGCTCGTCGCCGCGCTCGCC GACACGCTGGCGATGCGCGCGCCTGCCGCGTTCATCGAGCTCGACGGCGACGGGCGCTGGAAGCCGCTGTCGAAGGCGCC GCTCGCGCCCGTCGGATTCGCCGCCGAGGACGCGTTGCTCGATCCCCCGCACGGCGCGCCGCCGTTCCGGCTGCTGATGG AATACTTCGCATTCCCGGCGAAATTCGATTTCGTCGACATCGACGTCGCGCGCATCGCGCGCGCGGCGGGCCCGTGCCGG CGCCTGTCGCTGCACTTGCCCGTGGTCGGCGTCGCGCCGGATTCGCAGCAAGCGCGGGCGCTCGGCACGCTCGCCGCGTC GAACCTGCGCCTGTTCTGCACGCCCATCGTCAATCTGTTCAGCCAGGACGCGATGCCGATCTCGCTGCGCGACGCCGCGG CCGCGTACCCCGTCGTGCCGCAGGCGCTGAAATCGAACGGCATCGAGGTGCGCTCGATCGACGCGGTGCGCATCGCGCGC GAAGGCGAGCCGCGCGCGAACGTCGACGTGACGCCGTACCGCTCGATGCTGCACGGGCAGCACGGCCGCAAGGAACCCGT CTACTGGCTCGCGGAGCGCGACCGCTTCGCGCACGGCGCGCAGCCGGCGGCACTCAGGCTCGTCGATGCCGGCGGCGCGC CCGTGCGGCCGCGCGCCGATCAGTTGAACGTCGAGCTGAGCTGCACGAACGGCGACTATCCGCAGACATTGCCGATCGGC GACGCCGACGGCGATCTGCTCAACGAGACGGACAATCTGCCGGGCCGCATCACGATGCTGCGCAAGCCGACGCAAACCCG CCGGTTTGCGCGCGACCACGGCGCGCTGTGGCGCATGATCGCGGCGATGACGCCGCACGCGCTGCTGCTGCAGCCGTCTG GGCTCGGCGCGCTGAAGGCGCTGCTTGTCCAGTACGCGACGCGCTCGTCGAGCGCGATGCCGCAAATCGACGCGATCGCG AATCTCGATCACAAGGTCGCCGTGCGGTGGATGGCCGTGAAGCCGATGCCGACGTTCGTGCGCGGCATCGAAGTCGCGCT GACGCTGAACGAAGCCGCTTTCGCCACGTGCAGCCTGAAGGCGTTCATCGACGTGATGGACGGCTTCTTCGCGCTGCATG CGCCGCCGAACGGTTTCATCCAGCTCGTCGCGTATGCGCGCGACACGGGCCGCGAGCTGCATCGATGCGAGCCGCGCAGC GCGATCGCGCAGCTCGTGTAG
Upstream 100 bases:
>100_bases CGTTCGCATTTTGTATCGGCGCGCGGCCGATTATCTCGGCGGCGATTCCGCCGCCCCGCACGCAAGATGAACGACGCAAC CTCATGCCGACGCCGACCGA
Downstream 100 bases:
>100_bases CGTCGCGGCCCGCGAGCCGGATGCGCGCGAGATGCTCGCCGGCGGCGCGGCATGCGATCGCCTGAATCGTCGGCGACGAG TTCACGCCGCCAGCGGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Type VI Secretion Protein Family; T6ss C; Type VI Secretion System; Type VI Secretion System Protein EvpF; Type VI Secretion System Protein; Type VI Secretion Protein VasA; Type VI Secretion; Type VI Secretion System Core Protein; Protein ImpG; Cytoplasmic Protein SciC; Type VI Secretion System Protein ImpG; Conserved Protein; Protein ImpG/VasA
Number of amino acids: Translated: 646; Mature: 645
Protein sequence:
>646_residues MPDMPPRTVARAMPPAAARTRSADDRAPHDRANRLPRDRLFPMNDLLPYYEREIAMLRHSMREFAIRHPKIATRFGIADG QTDDMHVERMLQSFALLGAQIGEALDDEYPEFTEALVETACPDYLRPFPACSIAQFDAASLFSQLTEGVTIGRGTMLESR IGANRFRTAYDVALAPVSIVDARFRPASAAPPAARMPPSSTGIVSITFDALTAKPTLAALRARGLRAHLHGDAPLVAALA DTLAMRAPAAFIELDGDGRWKPLSKAPLAPVGFAAEDALLDPPHGAPPFRLLMEYFAFPAKFDFVDIDVARIARAAGPCR RLSLHLPVVGVAPDSQQARALGTLAASNLRLFCTPIVNLFSQDAMPISLRDAAAAYPVVPQALKSNGIEVRSIDAVRIAR EGEPRANVDVTPYRSMLHGQHGRKEPVYWLAERDRFAHGAQPAALRLVDAGGAPVRPRADQLNVELSCTNGDYPQTLPIG DADGDLLNETDNLPGRITMLRKPTQTRRFARDHGALWRMIAAMTPHALLLQPSGLGALKALLVQYATRSSSAMPQIDAIA NLDHKVAVRWMAVKPMPTFVRGIEVALTLNEAAFATCSLKAFIDVMDGFFALHAPPNGFIQLVAYARDTGRELHRCEPRS AIAQLV
Sequences:
>Translated_646_residues MPDMPPRTVARAMPPAAARTRSADDRAPHDRANRLPRDRLFPMNDLLPYYEREIAMLRHSMREFAIRHPKIATRFGIADG QTDDMHVERMLQSFALLGAQIGEALDDEYPEFTEALVETACPDYLRPFPACSIAQFDAASLFSQLTEGVTIGRGTMLESR IGANRFRTAYDVALAPVSIVDARFRPASAAPPAARMPPSSTGIVSITFDALTAKPTLAALRARGLRAHLHGDAPLVAALA DTLAMRAPAAFIELDGDGRWKPLSKAPLAPVGFAAEDALLDPPHGAPPFRLLMEYFAFPAKFDFVDIDVARIARAAGPCR RLSLHLPVVGVAPDSQQARALGTLAASNLRLFCTPIVNLFSQDAMPISLRDAAAAYPVVPQALKSNGIEVRSIDAVRIAR EGEPRANVDVTPYRSMLHGQHGRKEPVYWLAERDRFAHGAQPAALRLVDAGGAPVRPRADQLNVELSCTNGDYPQTLPIG DADGDLLNETDNLPGRITMLRKPTQTRRFARDHGALWRMIAAMTPHALLLQPSGLGALKALLVQYATRSSSAMPQIDAIA NLDHKVAVRWMAVKPMPTFVRGIEVALTLNEAAFATCSLKAFIDVMDGFFALHAPPNGFIQLVAYARDTGRELHRCEPRS AIAQLV >Mature_645_residues PDMPPRTVARAMPPAAARTRSADDRAPHDRANRLPRDRLFPMNDLLPYYEREIAMLRHSMREFAIRHPKIATRFGIADGQ TDDMHVERMLQSFALLGAQIGEALDDEYPEFTEALVETACPDYLRPFPACSIAQFDAASLFSQLTEGVTIGRGTMLESRI GANRFRTAYDVALAPVSIVDARFRPASAAPPAARMPPSSTGIVSITFDALTAKPTLAALRARGLRAHLHGDAPLVAALAD TLAMRAPAAFIELDGDGRWKPLSKAPLAPVGFAAEDALLDPPHGAPPFRLLMEYFAFPAKFDFVDIDVARIARAAGPCRR LSLHLPVVGVAPDSQQARALGTLAASNLRLFCTPIVNLFSQDAMPISLRDAAAAYPVVPQALKSNGIEVRSIDAVRIARE GEPRANVDVTPYRSMLHGQHGRKEPVYWLAERDRFAHGAQPAALRLVDAGGAPVRPRADQLNVELSCTNGDYPQTLPIGD ADGDLLNETDNLPGRITMLRKPTQTRRFARDHGALWRMIAAMTPHALLLQPSGLGALKALLVQYATRSSSAMPQIDAIAN LDHKVAVRWMAVKPMPTFVRGIEVALTLNEAAFATCSLKAFIDVMDGFFALHAPPNGFIQLVAYARDTGRELHRCEPRSA IAQLV
Specific function: Unknown
COG id: COG3519
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70323; Mature: 70192
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDMPPRTVARAMPPAAARTRSADDRAPHDRANRLPRDRLFPMNDLLPYYEREIAMLRHS CCCCCHHHHHHCCCCHHHHCCCCCCCCCCHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHH MREFAIRHPKIATRFGIADGQTDDMHVERMLQSFALLGAQIGEALDDEYPEFTEALVETA HHHHHHCCCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC CPDYLRPFPACSIAQFDAASLFSQLTEGVTIGRGTMLESRIGANRFRTAYDVALAPVSIV CHHHHCCCCCCCCHHHHHHHHHHHHHCCEEECCCCHHHHHHCHHHHHHHHHHHHCCHHHH DARFRPASAAPPAARMPPSSTGIVSITFDALTAKPTLAALRARGLRAHLHGDAPLVAALA HCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCEEEECCCCHHHHHHH DTLAMRAPAAFIELDGDGRWKPLSKAPLAPVGFAAEDALLDPPHGAPPFRLLMEYFAFPA HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC KFDFVDIDVARIARAAGPCRRLSLHLPVVGVAPDSQQARALGTLAASNLRLFCTPIVNLF CCCEEECCHHHHHHHCCCCCEEEEECCEEEECCCCHHHHHHHHHHHCCCEEEHHHHHHHH SQDAMPISLRDAAAAYPVVPQALKSNGIEVRSIDAVRIAREGEPRANVDVTPYRSMLHGQ CCCCCCEEEHHHCCCCCCCHHHHHCCCCEEEEEHHEEEECCCCCCCCCCCCHHHHHHCCC HGRKEPVYWLAERDRFAHGAQPAALRLVDAGGAPVRPRADQLNVELSCTNGDYPQTLPIG CCCCCCEEEEECCHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCC DADGDLLNETDNLPGRITMLRKPTQTRRFARDHGALWRMIAAMTPHALLLQPSGLGALKA CCCCCHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHH LLVQYATRSSSAMPQIDAIANLDHKVAVRWMAVKPMPTFVRGIEVALTLNEAAFATCSLK HHHHHHHCCCCCCCCHHHHHCCCCEEEEEEEEECCCHHHHCCEEEEEEECCHHHHHHHHH AFIDVMDGFFALHAPPNGFIQLVAYARDTGRELHRCEPRSAIAQLV HHHHHHHCCEEEECCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHCC >Mature Secondary Structure PDMPPRTVARAMPPAAARTRSADDRAPHDRANRLPRDRLFPMNDLLPYYEREIAMLRHS CCCCHHHHHHCCCCHHHHCCCCCCCCCCHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHH MREFAIRHPKIATRFGIADGQTDDMHVERMLQSFALLGAQIGEALDDEYPEFTEALVETA HHHHHHCCCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC CPDYLRPFPACSIAQFDAASLFSQLTEGVTIGRGTMLESRIGANRFRTAYDVALAPVSIV CHHHHCCCCCCCCHHHHHHHHHHHHHCCEEECCCCHHHHHHCHHHHHHHHHHHHCCHHHH DARFRPASAAPPAARMPPSSTGIVSITFDALTAKPTLAALRARGLRAHLHGDAPLVAALA HCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCEEEECCCCHHHHHHH DTLAMRAPAAFIELDGDGRWKPLSKAPLAPVGFAAEDALLDPPHGAPPFRLLMEYFAFPA HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC KFDFVDIDVARIARAAGPCRRLSLHLPVVGVAPDSQQARALGTLAASNLRLFCTPIVNLF CCCEEECCHHHHHHHCCCCCEEEEECCEEEECCCCHHHHHHHHHHHCCCEEEHHHHHHHH SQDAMPISLRDAAAAYPVVPQALKSNGIEVRSIDAVRIAREGEPRANVDVTPYRSMLHGQ CCCCCCEEEHHHCCCCCCCHHHHHCCCCEEEEEHHEEEECCCCCCCCCCCCHHHHHHCCC HGRKEPVYWLAERDRFAHGAQPAALRLVDAGGAPVRPRADQLNVELSCTNGDYPQTLPIG CCCCCCEEEEECCHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCC DADGDLLNETDNLPGRITMLRKPTQTRRFARDHGALWRMIAAMTPHALLLQPSGLGALKA CCCCCHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHH LLVQYATRSSSAMPQIDAIANLDHKVAVRWMAVKPMPTFVRGIEVALTLNEAAFATCSLK HHHHHHHCCCCCCCCHHHHHCCCCEEEEEEEEECCCHHHHCCEEEEEEECCHHHHHHHHH AFIDVMDGFFALHAPPNGFIQLVAYARDTGRELHRCEPRSAIAQLV HHHHHHHCCEEEECCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA