| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is ybbO [H]
Identifier: 83719913
GI number: 83719913
Start: 2715438
End: 2716232
Strand: Reverse
Name: ybbO [H]
Synonym: BTH_I2387
Alternate gene names: 83719913
Gene position: 2716232-2715438 (Counterclockwise)
Preceding gene: 83720859
Following gene: 83721458
Centisome position: 71.31
GC content: 70.31
Gene sequence:
>795_bases ATGACTGGAAAACGCATTCTGGTGACGGGCGCGGGCTCGGGTTTCGGCCGCGAGGTCGCGCTGCGGCTTGCCGCGAAGGG CCACCACGTGATCGCGGGCGTGCAGATCGCCCCGCAGGTCACTGAGCTGAACGCCGAGGCCGCGCGGCGCGGCGCGGCGC TCGACGCCGTGAAGCTCGATGTGACCTCCGCGCGCGACCGCGCGCAGGCCGCGCGCTGGGATATCGACGTGCTGCTGAAC AACGCGGGCGCGGGCGAGGCGGGCGCGCTCGCCGACCTGCCCGTCGATATCGTTCGCGAGCTGTTCGAGACGAACGTGTT CGGCCCGCTCGAGCTCACGCAGCAGGTCGCGCGCGGGATGATCGCGCGCGGGCGCGGCAGGATCGTGTTCGTATCGTCGA TCGCGGGGCTCATCACGGGCGCGTACACGGGCGCGTATTGCGCGTCGAAGCATGCGGTCGAGGCGATCGCCGAGGCGATG CACGCGGAGCTTGCCGTGCACGGCATTCAGATCGCCGTCGTCAACCCGGGGCCGTACAGCACGGGCTTCAACGACAGGAT GATGGAGACGCCGCGCCGCTGGCTCGACCCGGCGCGCGACGCGGCGACGCCCGAGAAGCTGACGTTCCCGCTCGAGCAGT TCGATCCGCAGGAGATGATCGAGAAGATGGTCGAAGTGACCGAGAGCGAAGGCGGGCTGTTCCGCAACTTGCTGCCCGCC GCCGCGGAGCAGTTCGTGCGCGACGAGCAGGCGCACGCGTGGACGCGCCTTCAGAACGAACGGCGCGGCGCGTGA
Upstream 100 bases:
>100_bases TCGGCGTATCGGGCGGCACGGTCGACGACGACGTTGCGGTCGCGCAGGCATGCGTCGACGCTTTCGCCACTTTTCTGAAC GCATCACAAGGAGCAAGGAC
Downstream 100 bases:
>100_bases GCGGACGGAGGACGGCGGGGCGTTGAACGGCGCGTGACCTGCTGCCGCCGGACAGGGCGAGCCGCGCCGTCCGCCGATGC CGATATCGGGACGGCCTGGC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MTGKRILVTGAGSGFGREVALRLAAKGHHVIAGVQIAPQVTELNAEAARRGAALDAVKLDVTSARDRAQAARWDIDVLLN NAGAGEAGALADLPVDIVRELFETNVFGPLELTQQVARGMIARGRGRIVFVSSIAGLITGAYTGAYCASKHAVEAIAEAM HAELAVHGIQIAVVNPGPYSTGFNDRMMETPRRWLDPARDAATPEKLTFPLEQFDPQEMIEKMVEVTESEGGLFRNLLPA AAEQFVRDEQAHAWTRLQNERRGA
Sequences:
>Translated_264_residues MTGKRILVTGAGSGFGREVALRLAAKGHHVIAGVQIAPQVTELNAEAARRGAALDAVKLDVTSARDRAQAARWDIDVLLN NAGAGEAGALADLPVDIVRELFETNVFGPLELTQQVARGMIARGRGRIVFVSSIAGLITGAYTGAYCASKHAVEAIAEAM HAELAVHGIQIAVVNPGPYSTGFNDRMMETPRRWLDPARDAATPEKLTFPLEQFDPQEMIEKMVEVTESEGGLFRNLLPA AAEQFVRDEQAHAWTRLQNERRGA >Mature_263_residues TGKRILVTGAGSGFGREVALRLAAKGHHVIAGVQIAPQVTELNAEAARRGAALDAVKLDVTSARDRAQAARWDIDVLLNN AGAGEAGALADLPVDIVRELFETNVFGPLELTQQVARGMIARGRGRIVFVSSIAGLITGAYTGAYCASKHAVEAIAEAMH AELAVHGIQIAVVNPGPYSTGFNDRMMETPRRWLDPARDAATPEKLTFPLEQFDPQEMIEKMVEVTESEGGLFRNLLPAA AEQFVRDEQAHAWTRLQNERRGA
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=244, Percent_Identity=32.7868852459016, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI223718074, Length=206, Percent_Identity=31.5533980582524, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI19743808, Length=228, Percent_Identity=30.7017543859649, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=32.8125, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI7706318, Length=189, Percent_Identity=31.2169312169312, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI150247226, Length=193, Percent_Identity=31.6062176165803, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI40548397, Length=194, Percent_Identity=31.9587628865979, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI214010158, Length=194, Percent_Identity=31.9587628865979, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI214010156, Length=194, Percent_Identity=31.9587628865979, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI22758144, Length=194, Percent_Identity=31.9587628865979, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI119392083, Length=187, Percent_Identity=34.7593582887701, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI22507405, Length=190, Percent_Identity=31.5789473684211, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI50726952, Length=185, Percent_Identity=31.8918918918919, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI44680136, Length=190, Percent_Identity=29.4736842105263, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI44680133, Length=190, Percent_Identity=29.4736842105263, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI17738292, Length=190, Percent_Identity=29.4736842105263, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI7705925, Length=223, Percent_Identity=29.5964125560538, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI40807363, Length=191, Percent_Identity=31.413612565445, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI4503817, Length=221, Percent_Identity=26.6968325791855, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI32483357, Length=214, Percent_Identity=28.9719626168224, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI142976729, Length=209, Percent_Identity=26.7942583732057, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI210032110, Length=201, Percent_Identity=25.8706467661692, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI157739938, Length=187, Percent_Identity=26.7379679144385, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI109715829, Length=236, Percent_Identity=26.6949152542373, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI32455239, Length=180, Percent_Identity=29.4444444444444, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI5031765, Length=180, Percent_Identity=29.4444444444444, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1786701, Length=194, Percent_Identity=35.5670103092784, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI87082100, Length=224, Percent_Identity=31.25, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87082160, Length=191, Percent_Identity=27.7486910994764, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1788459, Length=236, Percent_Identity=29.2372881355932, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787335, Length=187, Percent_Identity=31.0160427807487, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1790717, Length=215, Percent_Identity=28.3720930232558, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787905, Length=149, Percent_Identity=32.8859060402685, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI2367365, Length=195, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787820, Length=186, Percent_Identity=31.7204301075269, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1789208, Length=228, Percent_Identity=30.7017543859649, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786812, Length=225, Percent_Identity=29.7777777777778, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17570069, Length=193, Percent_Identity=33.160621761658, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71997402, Length=194, Percent_Identity=30.9278350515464, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17507613, Length=268, Percent_Identity=27.9850746268657, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI32563809, Length=268, Percent_Identity=27.9850746268657, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI115534694, Length=218, Percent_Identity=29.3577981651376, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17560150, Length=198, Percent_Identity=30.8080808080808, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17562990, Length=236, Percent_Identity=27.9661016949153, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17564282, Length=189, Percent_Identity=26.4550264550265, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI193210355, Length=193, Percent_Identity=29.5336787564767, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17557780, Length=194, Percent_Identity=28.8659793814433, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17508895, Length=236, Percent_Identity=25.8474576271186, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI115534660, Length=192, Percent_Identity=27.0833333333333, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17531453, Length=284, Percent_Identity=26.4084507042254, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71994600, Length=181, Percent_Identity=32.0441988950276, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17538486, Length=198, Percent_Identity=30.3030303030303, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71994604, Length=186, Percent_Identity=31.7204301075269, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17562908, Length=283, Percent_Identity=24.7349823321555, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI193203117, Length=194, Percent_Identity=25.2577319587629, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17562904, Length=201, Percent_Identity=28.8557213930348, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193203115, Length=192, Percent_Identity=25.5208333333333, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560676, Length=207, Percent_Identity=28.0193236714976, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17551412, Length=197, Percent_Identity=29.4416243654822, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17538480, Length=235, Percent_Identity=28.936170212766, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=31.1557788944724, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322067, Length=192, Percent_Identity=27.6041666666667, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=31.3131313131313, Blast_Score=72, Evalue=9e-14, Organism=Drosophila melanogaster, GI24580925, Length=197, Percent_Identity=31.4720812182741, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI281364892, Length=275, Percent_Identity=29.0909090909091, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI21358495, Length=201, Percent_Identity=31.8407960199005, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24641232, Length=211, Percent_Identity=33.175355450237, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI21355631, Length=174, Percent_Identity=32.7586206896552, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI116007236, Length=187, Percent_Identity=29.4117647058824, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI116007238, Length=173, Percent_Identity=30.635838150289, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI23397609, Length=185, Percent_Identity=32.972972972973, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI28571526, Length=190, Percent_Identity=33.6842105263158, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24644339, Length=209, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=32.6424870466321, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28571387, Length=193, Percent_Identity=30.0518134715026, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21356301, Length=204, Percent_Identity=26.4705882352941, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24640492, Length=202, Percent_Identity=27.7227722772277, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355319, Length=237, Percent_Identity=26.1603375527426, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24639444, Length=194, Percent_Identity=31.9587628865979, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28417; Mature: 28285
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGKRILVTGAGSGFGREVALRLAAKGHHVIAGVQIAPQVTELNAEAARRGAALDAVKLD CCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEEEEECCHHHHCCHHHHHCCCCHHHEEEE VTSARDRAQAARWDIDVLLNNAGAGEAGALADLPVDIVRELFETNVFGPLELTQQVARGM HHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH IARGRGRIVFVSSIAGLITGAYTGAYCASKHAVEAIAEAMHAELAVHGIQIAVVNPGPYS HHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCC TGFNDRMMETPRRWLDPARDAATPEKLTFPLEQFDPQEMIEKMVEVTESEGGLFRNLLPA CCCCHHHHHCCHHHCCCHHCCCCCHHEECCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHH AAEQFVRDEQAHAWTRLQNERRGA HHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TGKRILVTGAGSGFGREVALRLAAKGHHVIAGVQIAPQVTELNAEAARRGAALDAVKLD CCCEEEEEECCCCCCHHHHHHHHCCCCEEEEEEEECCHHHHCCHHHHHCCCCHHHEEEE VTSARDRAQAARWDIDVLLNNAGAGEAGALADLPVDIVRELFETNVFGPLELTQQVARGM HHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH IARGRGRIVFVSSIAGLITGAYTGAYCASKHAVEAIAEAMHAELAVHGIQIAVVNPGPYS HHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCC TGFNDRMMETPRRWLDPARDAATPEKLTFPLEQFDPQEMIEKMVEVTESEGGLFRNLLPA CCCCHHHHHCCHHHCCCHHCCCCCHHEECCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHH AAEQFVRDEQAHAWTRLQNERRGA HHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]