Click here to switch to the map view.

The map label for this gene is ybgJ [H]

Identifier: 83719891

GI number: 83719891

Start: 264041

End: 264820

Strand: Reverse

Name: ybgJ [H]

Synonym: BTH_I0230

Alternate gene names: 83719891

Gene position: 264820-264041 (Counterclockwise)

Preceding gene: 83718949

Following gene: 83719147

Centisome position: 6.95

GC content: 69.49

Gene sequence:

>780_bases
GTGCGCGAAAGTGTACGCCAAAGTCGTCCGCACGACGTTCGACGAATTTTTTTGACGAGAAGTTATCGACATTTTATTGA
TAATGTATTCTTCACTCGGCTCAACGCCGTTTGCTTGCCACCGATGACCACTCCACGCATCTATCCGCTTGGCGACACCG
CCCTCGTCTGCGAGTCGCCCCCGCCCGCGACGCTCGAATGCCAGCGCCGCGTGTGGGCGGTCGCGAGCGCGGCGGCCGGC
TGGCCGCACGTCGTCGACGTCGTGCCCGGCATGAACAACCTGACGATCGTGTTCGATCCGCTCGAAACGACGGCCGACAC
GCTCGCGCCGCTGATGAAGGCCGCGTGGCGCGACGCCGACGGCGTCGCCGAAAGCGGCCGCGAGATCGAGATCCCCGTCG
AGTACGGCGGCGCGTTCGGCCCCGATCTCGACGCGGTCGCGAAGCACACGGGGCTCGCGCGCGACGAGGTCGTGCGGCGC
CATTCGGCGGGCACCTACGTCGTGTTCTTCCTCGGCTTTCAGCCGGGCTTCACGTACATGGGCGGCCTCGACGGCTCGCT
GCACACGCCGCGCCGCGCCGCGCCGCGGCTCGAAGTGCCCGCCGGCTCGGTCGGCATCGGCGGCGAGCAGACGGGCATCT
ACCCGGCCGCCGCGCCCGGCGGCTGGCAGCTGATCGGCCGCACGCCGCTCGCGCTCTTCGATCCCGCGCGCACGCCGCCC
ACGCTCCTGCAGCCGGGCGACCGCGTGCGCTTCACCGTCGCAGGGGTGCACACCGGATGA

Upstream 100 bases:

>100_bases
AGCTCGGAGAGCTCCGCGCTTGTCTCGGAAACGAGATGTTCGGACGATACGATCTTGGTCGGATGGCGCGGCATGGCTGA
TCGGCGAAGGCGAGTCGGAA

Downstream 100 bases:

>100_bases
CTTCACGCCAAGCAACAGGCGGCATCGAGGTGCTGCGCGCCGGGCCGCTGTCGACGGTCCAGGATCTCGGACGCCGCGGC
TATCGCCATTTGGGCGTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRESVRQSRPHDVRRIFLTRSYRHFIDNVFFTRLNAVCLPPMTTPRIYPLGDTALVCESPPPATLECQRRVWAVASAAAG
WPHVVDVVPGMNNLTIVFDPLETTADTLAPLMKAAWRDADGVAESGREIEIPVEYGGAFGPDLDAVAKHTGLARDEVVRR
HSAGTYVVFFLGFQPGFTYMGGLDGSLHTPRRAAPRLEVPAGSVGIGGEQTGIYPAAAPGGWQLIGRTPLALFDPARTPP
TLLQPGDRVRFTVAGVHTG

Sequences:

>Translated_259_residues
MRESVRQSRPHDVRRIFLTRSYRHFIDNVFFTRLNAVCLPPMTTPRIYPLGDTALVCESPPPATLECQRRVWAVASAAAG
WPHVVDVVPGMNNLTIVFDPLETTADTLAPLMKAAWRDADGVAESGREIEIPVEYGGAFGPDLDAVAKHTGLARDEVVRR
HSAGTYVVFFLGFQPGFTYMGGLDGSLHTPRRAAPRLEVPAGSVGIGGEQTGIYPAAAPGGWQLIGRTPLALFDPARTPP
TLLQPGDRVRFTVAGVHTG
>Mature_259_residues
MRESVRQSRPHDVRRIFLTRSYRHFIDNVFFTRLNAVCLPPMTTPRIYPLGDTALVCESPPPATLECQRRVWAVASAAAG
WPHVVDVVPGMNNLTIVFDPLETTADTLAPLMKAAWRDADGVAESGREIEIPVEYGGAFGPDLDAVAKHTGLARDEVVRR
HSAGTYVVFFLGFQPGFTYMGGLDGSLHTPRRAAPRLEVPAGSVGIGGEQTGIYPAAAPGGWQLIGRTPLALFDPARTPP
TLLQPGDRVRFTVAGVHTG

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=211, Percent_Identity=54.9763033175355, Blast_Score=233, Evalue=1e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 28020; Mature: 28020

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRESVRQSRPHDVRRIFLTRSYRHFIDNVFFTRLNAVCLPPMTTPRIYPLGDTALVCESP
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCEEEECCCCEEEECCC
PPATLECQRRVWAVASAAAGWPHVVDVVPGMNNLTIVFDPLETTADTLAPLMKAAWRDAD
CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC
GVAESGREIEIPVEYGGAFGPDLDAVAKHTGLARDEVVRRHSAGTYVVFFLGFQPGFTYM
CHHHCCCEEEEEHHCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCCEEE
GGLDGSLHTPRRAAPRLEVPAGSVGIGGEQTGIYPAAAPGGWQLIGRTPLALFDPARTPP
CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCC
TLLQPGDRVRFTVAGVHTG
HHCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MRESVRQSRPHDVRRIFLTRSYRHFIDNVFFTRLNAVCLPPMTTPRIYPLGDTALVCESP
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCEEEECCCCEEEECCC
PPATLECQRRVWAVASAAAGWPHVVDVVPGMNNLTIVFDPLETTADTLAPLMKAAWRDAD
CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC
GVAESGREIEIPVEYGGAFGPDLDAVAKHTGLARDEVVRRHSAGTYVVFFLGFQPGFTYM
CHHHCCCEEEEEHHCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCCEEE
GGLDGSLHTPRRAAPRLEVPAGSVGIGGEQTGIYPAAAPGGWQLIGRTPLALFDPARTPP
CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCC
TLLQPGDRVRFTVAGVHTG
HHCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]