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The map label for this gene is nodJ [H]

Identifier: 83719813

GI number: 83719813

Start: 2844046

End: 2844882

Strand: Direct

Name: nodJ [H]

Synonym: BTH_I2486

Alternate gene names: 83719813

Gene position: 2844046-2844882 (Clockwise)

Preceding gene: 83718875

Following gene: 83719165

Centisome position: 74.66

GC content: 65.71

Gene sequence:

>837_bases
ATGGATACACGCCACTACACGCCGTCGCCGGCGGTCGCCCCCCGCCGGCGCGAATCGGCGTTCGCGCTCGCGCTGCCCGC
GAACGCCACCAACTGGATCGCCGTCTGGCGTCGCAATTATCTCGTCTGGCAAAAGCTCGCGATCGCGTCGATGTTCGGCA
ATCTCGCCGACCCGATGATCTATCTGTTCGGCCTCGGTCTCGGGCTCGGGCTGATGGTCGGGCACGTCGAGGGCGTGTCG
TACATCGCGTTCCTCGCGGCCGGAACGGTGGGATCGAGCGTGATGATCTCGGCGAGCTTCGAGTCGATGTACTCGGGCTT
CTCGCGCATGCATGTGCAGCGCACATGGGAAGCGATCATGCACACGCCGCTGTCGCTCGGCGACATCGTGCTCGGTGAGA
TCATCTGGGCCGCGAGCAAGGCGATGCTGTCGGGCGCGGCGATCATGCTCGTCGCCGGCGTCCTCGGCTATGCGAAGTTT
CCGTCGATGCTCGTCGCGCTGCCGGTGATCGCGCTCGCCGGCGTCGCGTTCGCGAGCCTCGCGATGATCGTCACCTCGCT
CGCGCCGTCCTACGATTTCTTCATGTTCTATCAGACGCTCGTGCTGACGCCGATGCTGCTGCTGTCGGGCGTGTTTTTCC
CGCTCGCGCAGTTGCCCGAATTCGCGCGACACATCGCACACGCGCTGCCGCTCGCGAATGCGGTCGACCTGATCCGCCCC
GCGATGCTCGATCGTCCCGCGACCGACGTCGCGCTTCACGTCGCCATACTCGCCGCATATGCGGTCGGCGGATTCTTCGT
CTGCGCGCGCCTGTTCAGGCGCCGAATGATGCGCTGA

Upstream 100 bases:

>100_bases
CGCCTGAAGGGCCGCGCCGGTCTGCGCTATCTGCACCGCCCCGCGAATCTCGAAGATGTATTCCTGCGGCTGACGGGTCG
CGAGATGCAGGATTGAAACG

Downstream 100 bases:

>100_bases
CCGAACCGGCCCGCGCGGGTCGGCGCGCGGCGCCGAACGCCGGACGAGCCGGCGGTTCGGCCCGCGCCGCCCCGATGCGG
CGCGCGGCCGCCCACGCAAC

Product: ABC transporter permease NodJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MDTRHYTPSPAVAPRRRESAFALALPANATNWIAVWRRNYLVWQKLAIASMFGNLADPMIYLFGLGLGLGLMVGHVEGVS
YIAFLAAGTVGSSVMISASFESMYSGFSRMHVQRTWEAIMHTPLSLGDIVLGEIIWAASKAMLSGAAIMLVAGVLGYAKF
PSMLVALPVIALAGVAFASLAMIVTSLAPSYDFFMFYQTLVLTPMLLLSGVFFPLAQLPEFARHIAHALPLANAVDLIRP
AMLDRPATDVALHVAILAAYAVGGFFVCARLFRRRMMR

Sequences:

>Translated_278_residues
MDTRHYTPSPAVAPRRRESAFALALPANATNWIAVWRRNYLVWQKLAIASMFGNLADPMIYLFGLGLGLGLMVGHVEGVS
YIAFLAAGTVGSSVMISASFESMYSGFSRMHVQRTWEAIMHTPLSLGDIVLGEIIWAASKAMLSGAAIMLVAGVLGYAKF
PSMLVALPVIALAGVAFASLAMIVTSLAPSYDFFMFYQTLVLTPMLLLSGVFFPLAQLPEFARHIAHALPLANAVDLIRP
AMLDRPATDVALHVAILAAYAVGGFFVCARLFRRRMMR
>Mature_278_residues
MDTRHYTPSPAVAPRRRESAFALALPANATNWIAVWRRNYLVWQKLAIASMFGNLADPMIYLFGLGLGLGLMVGHVEGVS
YIAFLAAGTVGSSVMISASFESMYSGFSRMHVQRTWEAIMHTPLSLGDIVLGEIIWAASKAMLSGAAIMLVAGVLGYAKF
PSMLVALPVIALAGVAFASLAMIVTSLAPSYDFFMFYQTLVLTPMLLLSGVFFPLAQLPEFARHIAHALPLANAVDLIRP
AMLDRPATDVALHVAILAAYAVGGFFVCARLFRRRMMR

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=249, Percent_Identity=23.2931726907631, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30145; Mature: 30145

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]