Click here to switch to the map view.

The map label for this gene is sodB [H]

Identifier: 83719621

GI number: 83719621

Start: 854109

End: 854774

Strand: Direct

Name: sodB [H]

Synonym: BTH_I0744

Alternate gene names: 83719621

Gene position: 854109-854774 (Clockwise)

Preceding gene: 83719967

Following gene: 83721177

Centisome position: 22.42

GC content: 61.11

Gene sequence:

>666_bases
TTGCGGGGTTATTCGGACTCGCCTACAATCGGGCGTTCCGCGGCATCCAACACTGCCCTCCCTACATACACATCGAAGGA
ACCGATCATGGCTCATACGCTCCCGCCGTTGCCGTACGCTGAAGACGCCCTCGCTCCGCACATCTCGCAGGAGACGATCC
AGTATCACTACGGCAAGCATCACCAGGCTTATGTGACGAACCTGAACAACCTGATCCCCGGCACCGAGTTCGAGAACCTG
TCGCTGGAAGAGATCGTGAAGAAGTCGTCGGGCGGCATCTTCAACAACGCCGCGCAAATCTGGAATCACACGTTCTTCTG
GAACAGCCTGTCTCCGAACGGCGGCGGCGCGCCGACTGGCGCGCTCGGCGACGCGATCAACGCGAAGTGGGGCTCGTTCG
ACGCGTTCAAGGAAGCGTTCACGAAGGCGGCGGTCGGCACGTTCGGCTCGGGCTGGGCGTGGCTCGTGAAGAAGGCGGAC
GGCTCGCTCGACATCGTGTCGACGAGCAACGCGGCCACGCCGCTCACGACGGCCGACAAGCCGCTCGTCACGATCGACGT
GTGGGAGCACGCTTACTACATCGATTACCGCAACGCGCGTCCGAAGTTCGTCGAAGCGTTCTGGAACATCGTGAACTGGG
ATTTCGCCGCGAAGAACTTCGCATAA

Upstream 100 bases:

>100_bases
CGCCGCGCGTGCGGCACGCGGTGCGCGCGCGCCGTTTGGCGCGTCGCGCATGCCGCGTCGACGTCGATTTTTCGGATATG
ACGGATAAAGGCCCGCGAGT

Downstream 100 bases:

>100_bases
CGCGCACGTTCGCATCCGTCATTTCCTACGACGACAGTTCGCAAAAAATCGAGCGATACGCAGTGACGAGATCTCGAATC
AGTCCCGACAAAAAGCCCTC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MRGYSDSPTIGRSAASNTALPTYTSKEPIMAHTLPPLPYAEDALAPHISQETIQYHYGKHHQAYVTNLNNLIPGTEFENL
SLEEIVKKSSGGIFNNAAQIWNHTFFWNSLSPNGGGAPTGALGDAINAKWGSFDAFKEAFTKAAVGTFGSGWAWLVKKAD
GSLDIVSTSNAATPLTTADKPLVTIDVWEHAYYIDYRNARPKFVEAFWNIVNWDFAAKNFA

Sequences:

>Translated_221_residues
MRGYSDSPTIGRSAASNTALPTYTSKEPIMAHTLPPLPYAEDALAPHISQETIQYHYGKHHQAYVTNLNNLIPGTEFENL
SLEEIVKKSSGGIFNNAAQIWNHTFFWNSLSPNGGGAPTGALGDAINAKWGSFDAFKEAFTKAAVGTFGSGWAWLVKKAD
GSLDIVSTSNAATPLTTADKPLVTIDVWEHAYYIDYRNARPKFVEAFWNIVNWDFAAKNFA
>Mature_221_residues
MRGYSDSPTIGRSAASNTALPTYTSKEPIMAHTLPPLPYAEDALAPHISQETIQYHYGKHHQAYVTNLNNLIPGTEFENL
SLEEIVKKSSGGIFNNAAQIWNHTFFWNSLSPNGGGAPTGALGDAINAKWGSFDAFKEAFTKAAVGTFGSGWAWLVKKAD
GSLDIVSTSNAATPLTTADKPLVTIDVWEHAYYIDYRNARPKFVEAFWNIVNWDFAAKNFA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=45.5, Blast_Score=169, Evalue=2e-42,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=45.5, Blast_Score=169, Evalue=2e-42,
Organism=Homo sapiens, GI67782309, Length=192, Percent_Identity=38.5416666666667, Blast_Score=127, Evalue=6e-30,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=69.7916666666667, Blast_Score=289, Evalue=1e-79,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=45.1456310679612, Blast_Score=171, Evalue=5e-44,
Organism=Caenorhabditis elegans, GI17506561, Length=200, Percent_Identity=39, Blast_Score=138, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI17569479, Length=194, Percent_Identity=40.7216494845361, Blast_Score=135, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=37.0192307692308, Blast_Score=131, Evalue=7e-32,
Organism=Drosophila melanogaster, GI17136812, Length=194, Percent_Identity=42.2680412371134, Blast_Score=146, Evalue=1e-35,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 24204; Mature: 24204

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGYSDSPTIGRSAASNTALPTYTSKEPIMAHTLPPLPYAEDALAPHISQETIQYHYGKH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHCCCCCHHHHHHHCCCC
HQAYVTNLNNLIPGTEFENLSLEEIVKKSSGGIFNNAAQIWNHTFFWNSLSPNGGGAPTG
CHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCEEEECCCCCCCCCCCCC
ALGDAINAKWGSFDAFKEAFTKAAVGTFGSGWAWLVKKADGSLDIVSTSNAATPLTTADK
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCC
PLVTIDVWEHAYYIDYRNARPKFVEAFWNIVNWDFAAKNFA
CEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRGYSDSPTIGRSAASNTALPTYTSKEPIMAHTLPPLPYAEDALAPHISQETIQYHYGKH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHCCCCCHHHHHHHCCCC
HQAYVTNLNNLIPGTEFENLSLEEIVKKSSGGIFNNAAQIWNHTFFWNSLSPNGGGAPTG
CHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCEEEECCCCCCCCCCCCC
ALGDAINAKWGSFDAFKEAFTKAAVGTFGSGWAWLVKKADGSLDIVSTSNAATPLTTADK
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCC
PLVTIDVWEHAYYIDYRNARPKFVEAFWNIVNWDFAAKNFA
CEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8181762; 12910271 [H]