Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 83719478

GI number: 83719478

Start: 2498779

End: 2499984

Strand: Direct

Name: yfdE [H]

Synonym: BTH_I2222

Alternate gene names: 83719478

Gene position: 2498779-2499984 (Clockwise)

Preceding gene: 83720219

Following gene: 83719865

Centisome position: 65.6

GC content: 69.24

Gene sequence:

>1206_bases
ATGAGCGCAACCCCCGGCCCGCTCGCGGGCGTCAAGGTGCTCGAACTCGGCACGCTGATCGCCGGCCCGTTCGCCGCGCG
CCTGCTCGCCGAGTTCGGCGCGGAAGTCATCAAGATCGAAGATCCGAACGGCGGCGATCCGCTGCGCAAGTGGCGCAAGC
TGTATCCGGAGGCGGGCGGCACGTCGCTGTGGTGGTCGGTGCAGGCGCGCAACAAGAAATCGGTGACGATCAACCTGAAG
TCCGACGAGGGCAAGGAGATCGTGCGCCGCTTGGCGCGCGAAGCCGACATCGTCGTCGAGAACTTCCGCCCCGGGCTGCT
CGAGAAGCTCGGCCTCGGCTACGACGTGCTGTCGGCCGACAATCCGGGCCTCGTGATGGTGCGCCTGTCGGGCTACGGGC
AAACGGGCCCGTACCGCGACCGTCCCGGTTTCGGCGCGATCGCCGAATCGATGGGCGGGCTGCGCCACATCACGGGCTAC
CCGGAGTTGCCGCCGCCGCGCATCGGCATCTCGATCGGCGATTCCATCGCGGCGCTGCACGGCGTGATCGGCGCGCTGAT
GGCGCTGCATCATCGCAACGCGAACGGCGGCGCGGGGCAGGTCGTCGACGTCGCGCTGTACGAGGCCGTCTTCAACATGA
TGGAAAGCGTCGTGCCCGAGTACGGCGTCTATGGGCTCGTGCGCGAGCGCACGGGCGCGTCGCTGCCGGGCATCGTGCCG
TCGAACACATATCCGTGCCGCGACGGCAGCATCGTGATCGGCGGCAACAGCGATCCGATCTTCAAGCGCCTGATGGGAGC
GATCGGGCGCGACGATCTCGCCGACGATCCGGCGCTCGCGCACAACGACGGCCGCGTGCCGCGCACGCAGGAGATCGACG
CGGCGATCGGCGCGTGGCTCGCCGAGCGCACGATCGACGAGGCGCTCGCGGTGCTGAACTCGGCCGACGTGCCGGCATCG
CGAATCTACAGCGTAGCCGACATGTTCACCGATCCGCAATTCGTCGCGCGCCAGATGATCCAGCGTTTCAAACTCGCCGA
CGGCGCGCAGATCCCGCTGCCGAACGTGACGCCGAAGCTGTCCGGCACGCCGGGCGAAACGCGCTGGCTCGGCCCGGCGC
TCGGCGAGCACACGGACGAGGTGCTCGGAGCGCTCGGCTACGACGCGCAGGCGATCGCCGCGCTGCGCGAGAAGCGCGCG
ATCTGA

Upstream 100 bases:

>100_bases
CGCGCGTGCGATGCTCGATCGACGCACGCTCTAGCGGGCTGCGCGCCCGCGCCGCGTGGCCCGCTGGGCCGCGCTCCGTT
CAACGATCCAAGGAAGCGAC

Downstream 100 bases:

>100_bases
GCGTCGAGGGCCGCGCGCGGCGTGCGTTTGCGCGGCATCGCGCGCGGCGCGCAACGCGGCCCGGGCTGTCGCTCTCGCGC
AATCTTTCCTCGGTTACAAT

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MSATPGPLAGVKVLELGTLIAGPFAARLLAEFGAEVIKIEDPNGGDPLRKWRKLYPEAGGTSLWWSVQARNKKSVTINLK
SDEGKEIVRRLAREADIVVENFRPGLLEKLGLGYDVLSADNPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGY
PELPPPRIGISIGDSIAALHGVIGALMALHHRNANGGAGQVVDVALYEAVFNMMESVVPEYGVYGLVRERTGASLPGIVP
SNTYPCRDGSIVIGGNSDPIFKRLMGAIGRDDLADDPALAHNDGRVPRTQEIDAAIGAWLAERTIDEALAVLNSADVPAS
RIYSVADMFTDPQFVARQMIQRFKLADGAQIPLPNVTPKLSGTPGETRWLGPALGEHTDEVLGALGYDAQAIAALREKRA
I

Sequences:

>Translated_401_residues
MSATPGPLAGVKVLELGTLIAGPFAARLLAEFGAEVIKIEDPNGGDPLRKWRKLYPEAGGTSLWWSVQARNKKSVTINLK
SDEGKEIVRRLAREADIVVENFRPGLLEKLGLGYDVLSADNPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGY
PELPPPRIGISIGDSIAALHGVIGALMALHHRNANGGAGQVVDVALYEAVFNMMESVVPEYGVYGLVRERTGASLPGIVP
SNTYPCRDGSIVIGGNSDPIFKRLMGAIGRDDLADDPALAHNDGRVPRTQEIDAAIGAWLAERTIDEALAVLNSADVPAS
RIYSVADMFTDPQFVARQMIQRFKLADGAQIPLPNVTPKLSGTPGETRWLGPALGEHTDEVLGALGYDAQAIAALREKRA
I
>Mature_400_residues
SATPGPLAGVKVLELGTLIAGPFAARLLAEFGAEVIKIEDPNGGDPLRKWRKLYPEAGGTSLWWSVQARNKKSVTINLKS
DEGKEIVRRLAREADIVVENFRPGLLEKLGLGYDVLSADNPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYP
ELPPPRIGISIGDSIAALHGVIGALMALHHRNANGGAGQVVDVALYEAVFNMMESVVPEYGVYGLVRERTGASLPGIVPS
NTYPCRDGSIVIGGNSDPIFKRLMGAIGRDDLADDPALAHNDGRVPRTQEIDAAIGAWLAERTIDEALAVLNSADVPASR
IYSVADMFTDPQFVARQMIQRFKLADGAQIPLPNVTPKLSGTPGETRWLGPALGEHTDEVLGALGYDAQAIAALREKRAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=390, Percent_Identity=31.2820512820513, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI300863124, Length=417, Percent_Identity=30.6954436450839, Blast_Score=185, Evalue=7e-47,
Organism=Homo sapiens, GI300863126, Length=390, Percent_Identity=30.2564102564103, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI13376042, Length=417, Percent_Identity=27.3381294964029, Blast_Score=138, Evalue=9e-33,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=26.5, Blast_Score=118, Evalue=9e-27,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=26.5, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266458393, Length=260, Percent_Identity=30.3846153846154, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=30.3846153846154, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI266458395, Length=131, Percent_Identity=37.4045801526718, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI42822893, Length=131, Percent_Identity=37.4045801526718, Blast_Score=94, Evalue=3e-19,
Organism=Escherichia coli, GI87082093, Length=379, Percent_Identity=32.1899736147757, Blast_Score=201, Evalue=7e-53,
Organism=Escherichia coli, GI1788717, Length=430, Percent_Identity=30.2325581395349, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI1786222, Length=402, Percent_Identity=29.8507462686567, Blast_Score=157, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI115535051, Length=341, Percent_Identity=28.4457478005865, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI32564160, Length=344, Percent_Identity=25, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=32.8282828282828, Blast_Score=223, Evalue=2e-58,
Organism=Drosophila melanogaster, GI24585488, Length=372, Percent_Identity=27.9569892473118, Blast_Score=108, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42768; Mature: 42637

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATPGPLAGVKVLELGTLIAGPFAARLLAEFGAEVIKIEDPNGGDPLRKWRKLYPEAGG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCC
TSLWWSVQARNKKSVTINLKSDEGKEIVRRLAREADIVVENFRPGLLEKLGLGYDVLSAD
CEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEECCC
NPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYPELPPPRIGISIGDSIAALH
CCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHH
GVIGALMALHHRNANGGAGQVVDVALYEAVFNMMESVVPEYGVYGLVRERTGASLPGIVP
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHCCCCCCCCCC
SNTYPCRDGSIVIGGNSDPIFKRLMGAIGRDDLADDPALAHNDGRVPRTQEIDAAIGAWL
CCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
AERTIDEALAVLNSADVPASRIYSVADMFTDPQFVARQMIQRFKLADGAQIPLPNVTPKL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SGTPGETRWLGPALGEHTDEVLGALGYDAQAIAALREKRAI
CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SATPGPLAGVKVLELGTLIAGPFAARLLAEFGAEVIKIEDPNGGDPLRKWRKLYPEAGG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCC
TSLWWSVQARNKKSVTINLKSDEGKEIVRRLAREADIVVENFRPGLLEKLGLGYDVLSAD
CEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEECCC
NPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYPELPPPRIGISIGDSIAALH
CCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHH
GVIGALMALHHRNANGGAGQVVDVALYEAVFNMMESVVPEYGVYGLVRERTGASLPGIVP
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHCCCCCCCCCC
SNTYPCRDGSIVIGGNSDPIFKRLMGAIGRDDLADDPALAHNDGRVPRTQEIDAAIGAWL
CCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
AERTIDEALAVLNSADVPASRIYSVADMFTDPQFVARQMIQRFKLADGAQIPLPNVTPKL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SGTPGETRWLGPALGEHTDEVLGALGYDAQAIAALREKRAI
CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]