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The map label for this gene is yafC [C]

Identifier: 83719370

GI number: 83719370

Start: 152039

End: 153094

Strand: Direct

Name: yafC [C]

Synonym: BTH_I0124

Alternate gene names: 83719370

Gene position: 152039-153094 (Clockwise)

Preceding gene: 83721210

Following gene: 284159413

Centisome position: 3.99

GC content: 67.33

Gene sequence:

>1056_bases
ATGGATCATTTGCAGTCGATGCGAGTGTTCGTCAAGGTCGCGGATCTCGGCAGTTTTGCCCGGGCGGCGAGCGCGATGGA
CATCTCGAATGCGGTCGCGACGCGCCACGTCGCCGACCTCGAAGGCCGGCTCGGCACCCGCCTTCTGAATCGCACCACCC
GTAGCCTGTCGCTGACCGAATCCGGCCAAGTCTATCTGGAGCGAGCCCGCCAGATCCTCGACGAGCTCGAAGACGTCGAG
CAGATGGTCGTCGCGCGCAACCACGAGCCCGTCGGCACGCTGCGGATCGTCGCGCCCGTCGTGTTCGGGCTGCACAACCT
CGCGCCCGTGCTGCAGACGTACACGCAGCGTTTCCCGAAGGTCATTCCCGATCTGACCCTCGTCGATCGTCAGGTGGATC
TCGTCGAAGAGGGATTCGACGTCGGCATCGTGATCACGCGGCAGATGCGCAGCGCGAGCATCGTCACGCGCCGGCTGACG
ACGGGCTGCATGGTGGTCTGCGCGACGCCGAGCTATCTGGAGAAGCACGGCACGCCGACGCATCCGGAGCAACTCGTCGA
GCATCCCTGTCTGAGCCTGCCGTCCGAATATTGGGGCGACGAGCGCGTGTTCACCGGTCCGGACGGCGAAGTGCGCGTGC
GGCCTTCGAACGTCGTCGTCGCGAACAACACTGAGATGCTGCGCCAGTTCGCGATGCTCGGCATGGGCGTCGCGATCCTG
CCGAGCTATCTGATCGGCAGCGACATCGCGCGCGGCAAGCTCGTGCGGCTGCTGAGCGACTACCGGCTGCCGCAGGTCGA
GATCAACATCGCGTATCCGAGCCGCCGCCACCTGCCGGCGAAGGTGCGCACGTTCATCGACCATCTCGTCGAGCACTTCA
GCCAATCGCCGGACACGATGCTCGGCGAGCAGTGGGCCACGCAGGGCGTGGCCGGCCAGCCGCTCGACGCGTTGCCTGCC
GATGCGCTCGCCGAGCGCTCGAGTGCCGATCCGGCGTTGTCGCCGCGCCTGCCGCGCGCGCCGCGGGCGCGCGCCGTCGT
ACCGTCTCCGCTGTAG

Upstream 100 bases:

>100_bases
TTCGCGGGAAGTTGAGCAACTCTGCATCTTTTTCGCTGTCGTAGGAAAATTACCCATTTGCTTCATATTTTTGAAGCGGT
AACAGCGGTAGGAGTGGAGT

Downstream 100 bases:

>100_bases
CGCCGCACGGCGTCGCGCGCATCGTCCGGCGTGCGCGCACGCCGTCGCGCGGCGAATCTCCTCCGCCAAAAGCAAAAGCG
CGGGCTCGTCGAGAGCCCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYLERARQILDELEDVE
QMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPKVIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLT
TGCMVVCATPSYLEKHGTPTHPEQLVEHPCLSLPSEYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAIL
PSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVEHFSQSPDTMLGEQWATQGVAGQPLDALPA
DALAERSSADPALSPRLPRAPRARAVVPSPL

Sequences:

>Translated_351_residues
MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYLERARQILDELEDVE
QMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPKVIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLT
TGCMVVCATPSYLEKHGTPTHPEQLVEHPCLSLPSEYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAIL
PSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVEHFSQSPDTMLGEQWATQGVAGQPLDALPA
DALAERSSADPALSPRLPRAPRARAVVPSPL
>Mature_351_residues
MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTESGQVYLERARQILDELEDVE
QMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPKVIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLT
TGCMVVCATPSYLEKHGTPTHPEQLVEHPCLSLPSEYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAIL
PSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVEHFSQSPDTMLGEQWATQGVAGQPLDALPA
DALAERSSADPALSPRLPRAPRARAVVPSPL

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=33.6734693877551, Blast_Score=168, Evalue=5e-43,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=32.996632996633, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI87081978, Length=304, Percent_Identity=31.5789473684211, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=29.2096219931272, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1787128, Length=302, Percent_Identity=28.1456953642384, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1789440, Length=259, Percent_Identity=30.1158301158301, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=28.9655172413793, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789173, Length=257, Percent_Identity=28.7937743190661, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1790011, Length=299, Percent_Identity=23.7458193979933, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI157672245, Length=142, Percent_Identity=28.8732394366197, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787879, Length=151, Percent_Identity=31.1258278145695, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=23.8754325259516, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1790262, Length=263, Percent_Identity=26.615969581749, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786448, Length=300, Percent_Identity=23.6666666666667, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1788297, Length=143, Percent_Identity=28.6713286713287, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87082132, Length=285, Percent_Identity=22.8070175438596, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1788706, Length=262, Percent_Identity=24.4274809160305, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 38756; Mature: 38756

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGTPT
HCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCEEEEECCHHHHHHCCCCC
HPEQLVEHPCLSLPSEYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAIL
CHHHHHHCHHHCCCHHHCCCCCEEECCCCCEEECCCCEEEECCHHHHHHHHHHHCCHHHH
PSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVEHFSQSPDTM
HHHHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHH
LGEQWATQGVAGQPLDALPADALAERSSADPALSPRLPRAPRARAVVPSPL
HHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRFPK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIPDLTLVDRQVDLVEEGFDVGIVITRQMRSASIVTRRLTTGCMVVCATPSYLEKHGTPT
HCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCEEEEECCHHHHHHCCCCC
HPEQLVEHPCLSLPSEYWGDERVFTGPDGEVRVRPSNVVVANNTEMLRQFAMLGMGVAIL
CHHHHHHCHHHCCCHHHCCCCCEEECCCCCEEECCCCEEEECCHHHHHHHHHHHCCHHHH
PSYLIGSDIARGKLVRLLSDYRLPQVEINIAYPSRRHLPAKVRTFIDHLVEHFSQSPDTM
HHHHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHH
LGEQWATQGVAGQPLDALPADALAERSSADPALSPRLPRAPRARAVVPSPL
HHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]