| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is alaS [H]
Identifier: 83719349
GI number: 83719349
Start: 3034577
End: 3037201
Strand: Reverse
Name: alaS [H]
Synonym: BTH_I2661
Alternate gene names: 83719349
Gene position: 3037201-3034577 (Counterclockwise)
Preceding gene: 83720797
Following gene: 83721640
Centisome position: 79.73
GC content: 68.5
Gene sequence:
>2625_bases ATGAAAGCCGCCGAAATCCGCGAGAAATTCCTCAAGTTCTTCGAATCGAAGGGCCACACGATCGTCCGCTCGTCGAGCCT CGTGCCCGGTAACGACCCCACGCTGCTCTTCACCAATTCGGGGATGGTGCAGTTCAAGGACGTGTTCCTCGGCGCCGAGA CGCGCCCGTACTCCCGCGCGACCACCGCGCAGCGCAGCGTGCGCGCGGGCGGCAAGCACAACGATCTCGAGAACGTCGGC TACACCGCGCGCCACCATACGTTCTTCGAGATGCTCGGCAACTTCTCGTTCGGCGATTACTTCAAGCGCGACGCGATCCA TTACGCGTGGGAGCTCTTGACGACCGTCTACAAGCTGCCCGCCGACAAGCTCTGGGTCACCGTCTATCACGACGACGACG AGGCCTACGACATCTGGGCGAAGGAAGTGGGCGTGCCCGCCGAGCGGATCATCCGGATCGGCGACAACAAGGGCGCGCGC TACGCGTCGGACAATTTCTGGCAGATGGGCGACACCGGCCCGTGCGGCCCGTGCTCGGAGATCTTCTACGATCACGGCCC GGGCGTCTGGGGCGGCCCGCCGGGGTCGCCGGAGGAAGACGGCGATCGCTACATCGAGATCTGGAATCTCGTGTTCATGC AGTTCAACCGCGACGCGCAGGGCAACATGACGCGCCTGCCGAAGCCGTGCGTCGACACCGGCATGGGCCTCGAGCGGATC GCGGCCGTGCTGCAGCACGTGCACAGCAACTACGAGATCGACCTGTTCCAGCAGCTGATCAAGGCGTCGGCGCGCGAAAC GGGCGTCGCCGATCTCGCGAACAACTCGCTGAAGGTGATCGCCGATCACATCCGCGCGTGCTCGTTCCTGATCGTCGACG GCGTGATCCCCGGCAACGAAGGCCGCGGCTACGTGCTGCGCCGGATCGTGCGCCGCGCGATCCGCCACGGCTACAAGCTC GGCCGCAAGGGGCCGTTCTTCCACAAGCTCGTGGCGGATCTCGTCGCCGAGATGGGCGCCGCCTATCCGGAGCTGAAGGA AGCCGAGCAGCGCGTGACCGACGTGCTGCGCCAGGAGGAAGAGCGCTTCTTCGAGACGATCGAGCACGGGATGTCGATCC TCGAGGCGGCGCTCGCCGATCTCGACGCCGCGGGCGGCAAGACGCTCGACGGCGAACTCGCGTTCAAGCTGCACGACACG TACGGCTTCCCGCTCGATCTGACGGCGGACGTGTGCCGCGAGCGCGGCGTGACGGTCGACGAGCCCGCGTTCGACGACGC GATGGCGCGCCAGCGCGAGCAGGCGCGCGCGGCGGGCAAGTTCAAGGCGACGCAGGGCCTCGAATACACGGGCGCGAAGA CGACGTTCCACGGCTACGAGGAGATCGCGTTCGACGACGCGAAGGTCGTCGCGCTGTACGTCGAAGGCGCGTCGGTCGGC GAGGTGAAGGCGGGCGAGAGCGCGGTCGTCGTGCTCGACCACACGCCGTTCTATGCGGAATCGGGCGGCCAGGTCGGCGA TCAGGGCGTGCTCGCGAACGCGGCCACGCGCTTCGCGGTCGCCGATACGCTGAAGGTCCAGGCCGACGTGATCGGCCACC ACGGCGAGCTCGAGCAGGGCGTGCTGAAGGTGGGCGACGCGGTTCGCGCGGAGATCGACGCCGCGCGCCGCGCGCGCACC GCGCGCAACCACTCGGCGACGCACCTGATGCACAAGGCGCTGCGCGATGTGCTCGGCTCGCACGTGCAGCAGAAGGGCTC GCTCGTCGACGCGGACAAGACCCGCTTCGACTTCGCGCACAACGCGCCGCTGACCGACGACGAAATCCGCCGCGTCGAGG CAATCGTCAACGAGCAGGTGCTCGCGAACGCGCCGGGCATCGTGCGCGTGATGCCGTATGACGACGCGGTGAAGGGCGGC GCGATGGCGCTCTTCGGCGAGAAGTACGGCGACGAAGTGCGCGTGCTCGATCTCGGCTTCTCGCGCGAGCTGTGCGGCGG CACGCACGTGCACCGCACGGGCGACATCGGCTTGTTCAAGATCGTCGCGGAAGGCGGCGTCGCGGCGGGCATTCGCCGCG TCGAGGCGATCACGGGCGACAACGCGGTGCGCTACGTGCAGGCGCTCGACGCGCGCGTGAACGCGGCGGCGGCCGCGCTG AAGGCGCAGCCGTCCGAGCTGATCCAGCGGATCGGCCAGGTGCAGGATCAGGTCAAGTCGCTCGAGAAGGAGCTTGGCGC GCTGAAGTCGAAGCTCGCGTCGAGCCAGGGCGACGAGCTCGCGCAGCAGGCGGTCGAAGTGGGTGGCGTGCACGTGCTCG CCGCGACGCTCGACGGCGCCGATGCGAAGACGCTGCGCGAAACCGTCGACAAGCTGAAGGACAAGCTCAAGAGCGCGGCG ATCGTGCTCGCGGCGGTCGACGGCGGCAAGGTCAGCCTGATCGCCGGCGTCACCGCGGACGCGAGCAAGAAGGTGAAGGC GGGCGAGCTCGTCAACTTCGTCGCGCAGCAGGTGGGCGGCAAGGGCGGCGGCCGGCCGGACATGGCGCAGGCGGGCGGCA CGGAGCCGGCTAACCTGCCGGCGGCGCTCGCGGGCGTCAAGGGCTGGGTCGAGGAGCGCCTGTAA
Upstream 100 bases:
>100_bases CTATCCCGTATAATCGATCGTTTCAGAAACCCGCCGCCGCCCGCTTGAGCCGGAGCGGCCGGCGCTCAACCCAGTTTTGG CCTGACCGTCCCCGCACGCT
Downstream 100 bases:
>100_bases CGCGACGGGGCGGCGCGCCGGGGATCGGCGTGCCGGTTCGTGCCGGTTCGTGCCGGTTCCGTGGCGTTTTCGTCGCGTTT TCGTGCCGTTCGCGGCGGGG
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS [H]
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRATTAQRSVRAGGKHNDLENVG YTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLPADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGAR YASDNFWQMGDTGPCGPCSEIFYDHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI AAVLQHVHSNYEIDLFQQLIKASARETGVADLANNSLKVIADHIRACSFLIVDGVIPGNEGRGYVLRRIVRRAIRHGYKL GRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEEERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDT YGFPLDLTADVCRERGVTVDEPAFDDAMARQREQARAAGKFKATQGLEYTGAKTTFHGYEEIAFDDAKVVALYVEGASVG EVKAGESAVVVLDHTPFYAESGGQVGDQGVLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDAVRAEIDAARRART ARNHSATHLMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVRVMPYDDAVKGG AMALFGEKYGDEVRVLDLGFSRELCGGTHVHRTGDIGLFKIVAEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAAL KAQPSELIQRIGQVQDQVKSLEKELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAA IVLAAVDGGKVSLIAGVTADASKKVKAGELVNFVAQQVGGKGGGRPDMAQAGGTEPANLPAALAGVKGWVEERL
Sequences:
>Translated_874_residues MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRATTAQRSVRAGGKHNDLENVG YTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLPADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGAR YASDNFWQMGDTGPCGPCSEIFYDHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI AAVLQHVHSNYEIDLFQQLIKASARETGVADLANNSLKVIADHIRACSFLIVDGVIPGNEGRGYVLRRIVRRAIRHGYKL GRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEEERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDT YGFPLDLTADVCRERGVTVDEPAFDDAMARQREQARAAGKFKATQGLEYTGAKTTFHGYEEIAFDDAKVVALYVEGASVG EVKAGESAVVVLDHTPFYAESGGQVGDQGVLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDAVRAEIDAARRART ARNHSATHLMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVRVMPYDDAVKGG AMALFGEKYGDEVRVLDLGFSRELCGGTHVHRTGDIGLFKIVAEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAAL KAQPSELIQRIGQVQDQVKSLEKELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAA IVLAAVDGGKVSLIAGVTADASKKVKAGELVNFVAQQVGGKGGGRPDMAQAGGTEPANLPAALAGVKGWVEERL >Mature_874_residues MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRATTAQRSVRAGGKHNDLENVG YTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLPADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGAR YASDNFWQMGDTGPCGPCSEIFYDHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI AAVLQHVHSNYEIDLFQQLIKASARETGVADLANNSLKVIADHIRACSFLIVDGVIPGNEGRGYVLRRIVRRAIRHGYKL GRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEEERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDT YGFPLDLTADVCRERGVTVDEPAFDDAMARQREQARAAGKFKATQGLEYTGAKTTFHGYEEIAFDDAKVVALYVEGASVG EVKAGESAVVVLDHTPFYAESGGQVGDQGVLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDAVRAEIDAARRART ARNHSATHLMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVRVMPYDDAVKGG AMALFGEKYGDEVRVLDLGFSRELCGGTHVHRTGDIGLFKIVAEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAAL KAQPSELIQRIGQVQDQVKSLEKELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAA IVLAAVDGGKVSLIAGVTADASKKVKAGELVNFVAQQVGGKGGGRPDMAQAGGTEPANLPAALAGVKGWVEERL
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI109148542, Length=977, Percent_Identity=37.6663254861822, Blast_Score=533, Evalue=1e-151, Organism=Homo sapiens, GI38569417, Length=954, Percent_Identity=34.0670859538784, Blast_Score=458, Evalue=1e-128, Organism=Homo sapiens, GI217416402, Length=377, Percent_Identity=23.342175066313, Blast_Score=67, Evalue=9e-11, Organism=Escherichia coli, GI1789048, Length=875, Percent_Identity=62.7428571428571, Blast_Score=1090, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=975, Percent_Identity=36.5128205128205, Blast_Score=536, Evalue=1e-152, Organism=Caenorhabditis elegans, GI17536681, Length=747, Percent_Identity=32.5301204819277, Blast_Score=367, Evalue=1e-101, Organism=Saccharomyces cerevisiae, GI6324911, Length=966, Percent_Identity=36.7494824016563, Blast_Score=551, Evalue=1e-157, Organism=Drosophila melanogaster, GI24582809, Length=956, Percent_Identity=36.1924686192469, Blast_Score=539, Evalue=1e-153, Organism=Drosophila melanogaster, GI45552267, Length=956, Percent_Identity=36.1924686192469, Blast_Score=539, Evalue=1e-153, Organism=Drosophila melanogaster, GI24658214, Length=788, Percent_Identity=30.9644670050761, Blast_Score=338, Evalue=8e-93,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD [H]
EC number: =6.1.1.7 [H]
Molecular weight: Translated: 94683; Mature: 94683
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: PS00087 SOD_CU_ZN_1 ; PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCEEEEHEEECCCCCCCCHH TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP HHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE CCEEEEEEEECCCCHHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCEECCCCCCCCCHHH IFYDHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHH AAVLQHVHSNYEIDLFQQLIKASARETGVADLANNSLKVIADHIRACSFLIVDGVIPGNE HHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHEEEECCCCCCC GRGYVLRRIVRRAIRHGYKLGRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEE CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH ERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVTVD HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHCCCCCC EPAFDDAMARQREQARAAGKFKATQGLEYTGAKTTFHGYEEIAFDDAKVVALYVEGASVG CCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCEECCHHHHHCCCCEEEEEEEECCCCC EVKAGESAVVVLDHTPFYAESGGQVGDQGVLANAATRFAVADTLKVQADVIGHHGELEQG CCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH VLKVGDAVRAEIDAARRARTARNHSATHLMHKALRDVLGSHVQQKGSLVDADKTRFDFAH HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCC NAPLTDDEIRRVEAIVNEQVLANAPGIVRVMPYDDAVKGGAMALFGEKYGDEVRVLDLGF CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCEEEEEECCC SRELCGGTHVHRTGDIGLFKIVAEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAAL CHHHCCCCCEEECCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH KAQPSELIQRIGQVQDQVKSLEKELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGA HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEEECCCC DAKTLRETVDKLKDKLKSAAIVLAAVDGGKVSLIAGVTADASKKVKAGELVNFVAQQVGG CHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCC KGGGRPDMAQAGGTEPANLPAALAGVKGWVEERL CCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCEEEEHEEECCCCCCCCHH TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP HHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE CCEEEEEEEECCCCHHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCEECCCCCCCCCHHH IFYDHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHH AAVLQHVHSNYEIDLFQQLIKASARETGVADLANNSLKVIADHIRACSFLIVDGVIPGNE HHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHEEEECCCCCCC GRGYVLRRIVRRAIRHGYKLGRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEE CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH ERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVTVD HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHCCCCCC EPAFDDAMARQREQARAAGKFKATQGLEYTGAKTTFHGYEEIAFDDAKVVALYVEGASVG CCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCEECCHHHHHCCCCEEEEEEEECCCCC EVKAGESAVVVLDHTPFYAESGGQVGDQGVLANAATRFAVADTLKVQADVIGHHGELEQG CCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH VLKVGDAVRAEIDAARRARTARNHSATHLMHKALRDVLGSHVQQKGSLVDADKTRFDFAH HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCC NAPLTDDEIRRVEAIVNEQVLANAPGIVRVMPYDDAVKGGAMALFGEKYGDEVRVLDLGF CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCEEEEEECCC SRELCGGTHVHRTGDIGLFKIVAEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAAL CHHHCCCCCEEECCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH KAQPSELIQRIGQVQDQVKSLEKELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGA HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEEECCCC DAKTLRETVDKLKDKLKSAAIVLAAVDGGKVSLIAGVTADASKKVKAGELVNFVAQQVGG CHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCC KGGGRPDMAQAGGTEPANLPAALAGVKGWVEERL CCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA