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The map label for this gene is ydcN [C]

Identifier: 83719318

GI number: 83719318

Start: 1611642

End: 1612220

Strand: Reverse

Name: ydcN [C]

Synonym: BTH_I1428

Alternate gene names: 83719318

Gene position: 1612220-1611642 (Counterclockwise)

Preceding gene: 83720038

Following gene: 83719012

Centisome position: 42.32

GC content: 70.12

Gene sequence:

>579_bases
ATGGACGTCAACCAACTGATCGCGCGCCGGGTGCGCGCCCTTCGGGATCTTCGCGGCTACTCGCTCGACGCGCTCGCCGA
GCGCAGCAAGGTGAGCCGCTCGAACATCTCGCTCATCGAACGCGCGCAGAGCAGCCCGACCGCCGTCGTGCTCGAGCGGC
TCGCGAGCGCGCTCGGCGTGTCGATCGCGTCGCTGTTCGAGCGCGATCGCGCCGCGTCGCCGCTCAGTCGCGCGGCCGAG
CAGCCGGTCTGGAAAGACCCGGCGTCGGGCTACGTGCGCCGCAGCCTGTCGCCCGCGGCGCCCTCGCCGCTGCAACTCGT
CGAGGTCAAGTTTCCGCCCGGCGAGCGCGTGGCATACGACAGCGGCGAGCGCAGCGCCGATTTCCATCAGCAGGTCTGGA
TGCTCGAAGGCGAGATGGACATCACGAGCGGCGACGAAACGTGGCGCGTCGCGGCCGGCGACTGCCTCGCGATGCGTCTC
GACCGCCCGGCCATCTTTTTCAATCCGGGCCGCAAGGCCGCGCGTTATGTCGTCGCGCTCGGCGCGGCGAATGCCGTCCG
TACCGGGAGACACGAATGA

Upstream 100 bases:

>100_bases
AAGCGGCGCCCCCTCTCCGCCCGCGCGGCGCACAAGCGTGACGTTCGTTCGCTCATCCGGCATCTAGTATCCTGGACTTT
ATTCCAGCATACTGGATCAT

Downstream 100 bases:

>100_bases
GCGATGCGATCGACACGCGATGCGTCGGGCCGCACGAGGCGGCCGCATGCATCGACGCGCTGTCCGACGTGCTGATCGAT
TGCGTCGAAGGCGGCGCGTC

Product: DNA-binding protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Xre Family xin-Antitoxin System Antitoxin Component; Transcription Regulator Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein; Helix-Turn-Helix Family Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel; Transcriptional Regulator Protein LacI Family; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulatory Protein With Hth Domain; Cupin 2 Conserved Barrel Domain Protein

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MDVNQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLASALGVSIASLFERDRAASPLSRAAE
QPVWKDPASGYVRRSLSPAAPSPLQLVEVKFPPGERVAYDSGERSADFHQQVWMLEGEMDITSGDETWRVAAGDCLAMRL
DRPAIFFNPGRKAARYVVALGAANAVRTGRHE

Sequences:

>Translated_192_residues
MDVNQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLASALGVSIASLFERDRAASPLSRAAE
QPVWKDPASGYVRRSLSPAAPSPLQLVEVKFPPGERVAYDSGERSADFHQQVWMLEGEMDITSGDETWRVAAGDCLAMRL
DRPAIFFNPGRKAARYVVALGAANAVRTGRHE
>Mature_192_residues
MDVNQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLASALGVSIASLFERDRAASPLSRAAE
QPVWKDPASGYVRRSLSPAAPSPLQLVEVKFPPGERVAYDSGERSADFHQQVWMLEGEMDITSGDETWRVAAGDCLAMRL
DRPAIFFNPGRKAARYVVALGAANAVRTGRHE

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21060; Mature: 21060

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVNQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLASALGV
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SIASLFERDRAASPLSRAAEQPVWKDPASGYVRRSLSPAAPSPLQLVEVKFPPGERVAYD
HHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEC
SGERSADFHQQVWMLEGEMDITSGDETWRVAAGDCLAMRLDRPAIFFNPGRKAARYVVAL
CCCCCHHHHHHHEEECCCEEECCCCCEEEEECCCEEEEEECCCEEEECCCHHHHHHHHHH
GAANAVRTGRHE
CCCHHHHCCCCC
>Mature Secondary Structure
MDVNQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLASALGV
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SIASLFERDRAASPLSRAAEQPVWKDPASGYVRRSLSPAAPSPLQLVEVKFPPGERVAYD
HHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEC
SGERSADFHQQVWMLEGEMDITSGDETWRVAAGDCLAMRLDRPAIFFNPGRKAARYVVAL
CCCCCHHHHHHHEEECCCEEECCCCCEEEEECCCEEEEEECCCEEEECCCHHHHHHHHHH
GAANAVRTGRHE
CCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA