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The map label for this gene is potF [H]

Identifier: 83719114

GI number: 83719114

Start: 2563872

End: 2564966

Strand: Direct

Name: potF [H]

Synonym: BTH_I2276

Alternate gene names: 83719114

Gene position: 2563872-2564966 (Clockwise)

Preceding gene: 83719376

Following gene: 83719844

Centisome position: 67.31

GC content: 63.65

Gene sequence:

>1095_bases
ATGAAGGCAAAGGTGGCGGGCCGGTTGACGGCACTTGCGCTCTGCGCGGGCGCAACGGTGGCGGCGGCGAAGGATACGCA
GCTCAACGTCTATAACTGGTCGGACTACATTGCGAAGGACACGATCCCGAACTTCGAGAAGCAGACGGGCGTCAAGGTCC
GCTACGACAACTACGACAGCGACGACACGCTGCAGGCGAAGCTCCTGACCGGCAACTCGGGCTACGACATCGTCGTGCCG
ACGAGCAACTACGCGGGCAAGCAGATCCAGGCCGGCATCTTCGCGCCGCTCGACAAGTCGAAGCTGCCGAACCTCAAGTA
TCTCGATCCGCAACTGATGGCGCTCGTCGCGGGCGCCGATCCGGGCAACAAGTACGTGGTGCCCTGGGCGTACGGCACGA
CGGGCCTCGGCTACAACGTCGACAAGGCGCAGAAGATCCTCGGCAAGGTGCCGCTCGACAACTGGGACATCCTGTTCAAG
CCGGAGAACATCTCGAAGCTGAAGACGTGCGGCGTGTCGGTGCTCGATGCGCCCGACCAGATGTTCGCGGCGACGCTGCG
CTACATCGGCAAGGACCCGATGAGCACGAACCCGGCCGACTACCAGGCCGCGATGCAGGTGCTCAAGAAGATCCGCCCGT
ACATCACGCAGTTCAACTCGTCGGGCTACATCAACGACATGGTCGGGGGCGACATCTGCTTCGCGTTCGGCTGGTCGGGC
GACGTCGTGATCGCGAAGCACCGCGCGCTCGAGGCGAAGAAGCCGTACAAGCTCGAGTACTACGTGCCGAAGGGCGGCGC
GCCCGTGTGGTTCGACGTGATGGCGATCCCGAAGGACGCGAAGAACAAGGACGCCGCGCTGCAATGGATCAACTACATCG
AGGATCCGAAGGTCCACGCGGCGATCACGAACGCGGTCTATTACCCGAGCGCGAACGCGGAGGCGCGCAAGTACGTGCGC
CCGGACGTCGCGAACGACCCGGCCGTGTACCCGCATCCGGACGTCGTGAAGACGCTGTTCCTGCTCAAGCCGCTGCCGCC
TGAAATCCAGCGCCTGCAGACGCGTCTTTGGACCGAGCTGAAATCGGGACGCTGA

Upstream 100 bases:

>100_bases
ATTAGTGGTAGCTTTCGGGGTTTTCAAGGGGCGGCGCGAAACGGTGCGCCGCAGTGGCGAGGCTGACGGCGATCGAATCG
GTTCGATCAGGGAGAACGGG

Downstream 100 bases:

>100_bases
CGCGAAGCGCGCAGCATCGCAGCAAACCTGAGAAGCCCCTGGTGCCCCCGGGGGCTTTGTTCGTCAAACGTAGGAGCACA
GCAGCACATCATGAATAGTC

Product: putrescine ABC transporter periplasmic putrescine-binding protein

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MKAKVAGRLTALALCAGATVAAAKDTQLNVYNWSDYIAKDTIPNFEKQTGVKVRYDNYDSDDTLQAKLLTGNSGYDIVVP
TSNYAGKQIQAGIFAPLDKSKLPNLKYLDPQLMALVAGADPGNKYVVPWAYGTTGLGYNVDKAQKILGKVPLDNWDILFK
PENISKLKTCGVSVLDAPDQMFAATLRYIGKDPMSTNPADYQAAMQVLKKIRPYITQFNSSGYINDMVGGDICFAFGWSG
DVVIAKHRALEAKKPYKLEYYVPKGGAPVWFDVMAIPKDAKNKDAALQWINYIEDPKVHAAITNAVYYPSANAEARKYVR
PDVANDPAVYPHPDVVKTLFLLKPLPPEIQRLQTRLWTELKSGR

Sequences:

>Translated_364_residues
MKAKVAGRLTALALCAGATVAAAKDTQLNVYNWSDYIAKDTIPNFEKQTGVKVRYDNYDSDDTLQAKLLTGNSGYDIVVP
TSNYAGKQIQAGIFAPLDKSKLPNLKYLDPQLMALVAGADPGNKYVVPWAYGTTGLGYNVDKAQKILGKVPLDNWDILFK
PENISKLKTCGVSVLDAPDQMFAATLRYIGKDPMSTNPADYQAAMQVLKKIRPYITQFNSSGYINDMVGGDICFAFGWSG
DVVIAKHRALEAKKPYKLEYYVPKGGAPVWFDVMAIPKDAKNKDAALQWINYIEDPKVHAAITNAVYYPSANAEARKYVR
PDVANDPAVYPHPDVVKTLFLLKPLPPEIQRLQTRLWTELKSGR
>Mature_364_residues
MKAKVAGRLTALALCAGATVAAAKDTQLNVYNWSDYIAKDTIPNFEKQTGVKVRYDNYDSDDTLQAKLLTGNSGYDIVVP
TSNYAGKQIQAGIFAPLDKSKLPNLKYLDPQLMALVAGADPGNKYVVPWAYGTTGLGYNVDKAQKILGKVPLDNWDILFK
PENISKLKTCGVSVLDAPDQMFAATLRYIGKDPMSTNPADYQAAMQVLKKIRPYITQFNSSGYINDMVGGDICFAFGWSG
DVVIAKHRALEAKKPYKLEYYVPKGGAPVWFDVMAIPKDAKNKDAALQWINYIEDPKVHAAITNAVYYPSANAEARKYVR
PDVANDPAVYPHPDVVKTLFLLKPLPPEIQRLQTRLWTELKSGR

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine. Polyamine binding protein [H]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787078, Length=362, Percent_Identity=51.3812154696133, Blast_Score=376, Evalue=1e-105,
Organism=Escherichia coli, GI1787367, Length=317, Percent_Identity=34.7003154574132, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI1787711, Length=297, Percent_Identity=24.2424242424242, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 40221; Mature: 40221

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKVAGRLTALALCAGATVAAAKDTQLNVYNWSDYIAKDTIPNFEKQTGVKVRYDNYDS
CCCCHHHHHHHHHHHHCCEEEECCCCEEEEEECHHHHHHCCCCCCHHHCCCEEEECCCCC
DDTLQAKLLTGNSGYDIVVPTSNYAGKQIQAGIFAPLDKSKLPNLKYLDPQLMALVAGAD
CCCEEEEEEECCCCCEEEEECCCCCCCEEECCEECCCCCCCCCCCCCCCHHHEEEEECCC
PGNKYVVPWAYGTTGLGYNVDKAQKILGKVPLDNWDILFKPENISKLKTCGVSVLDAPDQ
CCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCHHHHHCCCEEECCCHH
MFAATLRYIGKDPMSTNPADYQAAMQVLKKIRPYITQFNSSGYINDMVGGDICFAFGWSG
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEEECCCC
DVVIAKHRALEAKKPYKLEYYVPKGGAPVWFDVMAIPKDAKNKDAALQWINYIEDPKVHA
CEEEEECCHHCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
AITNAVYYPSANAEARKYVRPDVANDPAVYPHPDVVKTLFLLKPLPPEIQRLQTRLWTEL
EEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
KSGR
HCCC
>Mature Secondary Structure
MKAKVAGRLTALALCAGATVAAAKDTQLNVYNWSDYIAKDTIPNFEKQTGVKVRYDNYDS
CCCCHHHHHHHHHHHHCCEEEECCCCEEEEEECHHHHHHCCCCCCHHHCCCEEEECCCCC
DDTLQAKLLTGNSGYDIVVPTSNYAGKQIQAGIFAPLDKSKLPNLKYLDPQLMALVAGAD
CCCEEEEEEECCCCCEEEEECCCCCCCEEECCEECCCCCCCCCCCCCCCHHHEEEEECCC
PGNKYVVPWAYGTTGLGYNVDKAQKILGKVPLDNWDILFKPENISKLKTCGVSVLDAPDQ
CCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCHHHHHCCCEEECCCHH
MFAATLRYIGKDPMSTNPADYQAAMQVLKKIRPYITQFNSSGYINDMVGGDICFAFGWSG
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEEECCCC
DVVIAKHRALEAKKPYKLEYYVPKGGAPVWFDVMAIPKDAKNKDAALQWINYIEDPKVHA
CEEEEECCHHCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
AITNAVYYPSANAEARKYVRPDVANDPAVYPHPDVVKTLFLLKPLPPEIQRLQTRLWTEL
EEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
KSGR
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: Polyamine Binding Protein [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8416922; 8905232; 9278503; 9298646; 9651355 [H]